Detailed information    

insolico Bioinformatically predicted

Overview

Name   comW   Type   Regulator
Locus tag   I6I32_RS09595 Genome accession   NZ_CP066041
Coordinates   1084578..1084814 (-) Length   78 a.a.
NCBI ID   WP_084880024.1    Uniprot ID   -
Organism   Streptococcus oralis strain FDAARGOS_1075     
Function   stabilization and activation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1079578..1089814
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I32_RS05300 (I6I32_05300) - 1080702..1081190 (-) 489 WP_198464224.1 hypothetical protein -
  I6I32_RS05305 (I6I32_05305) - 1081207..1081746 (-) 540 WP_198464225.1 histidine phosphatase family protein -
  I6I32_RS05310 (I6I32_05310) - 1081748..1082191 (-) 444 WP_000701981.1 dUTP diphosphatase -
  I6I32_RS05320 (I6I32_05320) tadA 1082382..1082849 (-) 468 WP_198464226.1 tRNA adenosine(34) deaminase TadA -
  I6I32_RS05325 (I6I32_05325) - 1083050..1084336 (-) 1287 WP_061428590.1 adenylosuccinate synthase -
  I6I32_RS09595 comW 1084578..1084814 (-) 237 WP_084880024.1 sigma(X)-activator ComW Regulator

Sequence

Protein


Download         Length: 78 a.a.        Molecular weight: 9606.19 Da        Isoelectric Point: 8.9644

>NTDB_id=453276 I6I32_RS09595 WP_084880024.1 1084578..1084814(-) (comW) [Streptococcus oralis strain FDAARGOS_1075]
MLQKFYDRAFVFLKLVEQEYASLGQSCSEWESLHLRFLLYYLIRFKIKSDRDFSLYHFRTAYRLYLDKLLQCGTTFIQ

Nucleotide


Download         Length: 237 bp        

>NTDB_id=453276 I6I32_RS09595 WP_084880024.1 1084578..1084814(-) (comW) [Streptococcus oralis strain FDAARGOS_1075]
ATGCTTCAGAAATTTTATGATCGAGCATTTGTCTTTTTGAAACTAGTTGAACAAGAATATGCCTCTTTAGGGCAGAGTTG
TTCAGAGTGGGAATCACTTCATCTTCGGTTTTTACTATATTACTTAATCCGATTTAAAATTAAAAGTGATAGGGACTTTT
CTCTATATCACTTTAGAACAGCTTATCGTCTATATCTAGATAAATTACTGCAATGTGGTACAACTTTTATCCAATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comW Streptococcus mitis NCTC 12261

48.571

89.744

0.436
  comW Streptococcus mitis SK321

48.571

89.744

0.436
  comW Streptococcus pneumoniae Rx1

45.714

89.744

0.41
  comW Streptococcus pneumoniae D39

45.714

89.744

0.41
  comW Streptococcus pneumoniae R6

45.714

89.744

0.41
  comW Streptococcus pneumoniae TIGR4

45.714

89.744

0.41