Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   I6I32_RS06150 Genome accession   NZ_CP066041
Coordinates   1266276..1266869 (+) Length   197 a.a.
NCBI ID   WP_000273401.1    Uniprot ID   -
Organism   Streptococcus oralis strain FDAARGOS_1075     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1261276..1271869
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I32_RS06130 (I6I32_06130) - 1261504..1261944 (-) 441 WP_198464306.1 LytTR family DNA-binding domain-containing protein -
  I6I32_RS06135 (I6I32_06135) hexB 1262258..1264207 (+) 1950 WP_198464307.1 DNA mismatch repair endonuclease MutL Machinery gene
  I6I32_RS06140 (I6I32_06140) - 1264361..1264858 (-) 498 WP_198464308.1 helix-turn-helix domain-containing protein -
  I6I32_RS06145 (I6I32_06145) - 1265031..1266263 (+) 1233 WP_000657470.1 MFS transporter -
  I6I32_RS06150 (I6I32_06150) ruvA 1266276..1266869 (+) 594 WP_000273401.1 Holliday junction branch migration protein RuvA Machinery gene
  I6I32_RS06155 (I6I32_06155) - 1266879..1267445 (+) 567 WP_001126061.1 DNA-3-methyladenine glycosylase I -
  I6I32_RS06160 (I6I32_06160) - 1267526..1267789 (-) 264 WP_000166112.1 SemiSWEET family transporter -
  I6I32_RS06165 (I6I32_06165) - 1267895..1268929 (-) 1035 WP_198464309.1 S66 peptidase family protein -
  I6I32_RS06170 (I6I32_06170) - 1269097..1269444 (-) 348 WP_198464310.1 TfoX/Sxy family protein -
  I6I32_RS06175 (I6I32_06175) - 1269460..1270137 (-) 678 WP_198464311.1 DUF1129 domain-containing protein -
  I6I32_RS06180 (I6I32_06180) - 1270149..1271093 (-) 945 WP_000815620.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21754.21 Da        Isoelectric Point: 6.2573

>NTDB_id=453248 I6I32_RS06150 WP_000273401.1 1266276..1266869(+) (ruvA) [Streptococcus oralis strain FDAARGOS_1075]
MYEYLKGIITKITAKYIILEANGIGYILHVANPYAYSGQVNQETQIYVHQVVREDAHLLYGFRSEDEKKLFLSLISVSGI
GPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKTAQQMVLDLEGKVVVASDDLPSKVAVQTSAENQELEEAMEAM
LALGYKATELKKIKKFFEGTTDTAENYIKSALKMLVK

Nucleotide


Download         Length: 594 bp        

>NTDB_id=453248 I6I32_RS06150 WP_000273401.1 1266276..1266869(+) (ruvA) [Streptococcus oralis strain FDAARGOS_1075]
ATGTACGAATATCTAAAAGGAATCATTACCAAAATCACTGCTAAATATATCATCCTTGAGGCAAATGGTATCGGTTATAT
CTTGCATGTAGCCAATCCCTATGCCTACTCAGGTCAGGTCAATCAAGAAACTCAGATTTATGTGCACCAAGTTGTTCGTG
AGGATGCCCATCTGCTCTACGGTTTTCGCTCAGAAGATGAGAAAAAGCTCTTTCTCAGTCTGATCTCGGTCTCAGGGATT
GGTCCTGTGTCAGCTCTTGCTATCATCGCAGCTGATGACAATGCTGGCTTGGTTCAAGCGATCGAGACTAAGAACATCAC
CTACTTGACCAAGTTCCCTAAAATTGGCAAGAAAACAGCCCAGCAGATGGTGCTGGACTTGGAAGGCAAGGTAGTCGTGG
CTAGTGATGACCTTCCTTCCAAGGTCGCAGTGCAAACCAGCGCTGAAAACCAAGAACTGGAAGAAGCTATGGAAGCCATG
CTGGCACTGGGCTACAAGGCGACTGAACTTAAGAAAATCAAGAAATTCTTTGAAGGAACGACGGATACAGCAGAGAACTA
TATCAAGTCGGCCCTTAAGATGTTGGTCAAATAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

96.447

100

0.964
  ruvA Streptococcus pneumoniae R6

95.939

100

0.959
  ruvA Streptococcus pneumoniae D39

95.939

100

0.959
  ruvA Bacillus subtilis subsp. subtilis str. 168

40.291

100

0.421