Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HT750_RS12800 Genome accession   NZ_CP054556
Coordinates   2612218..2612754 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain LWY24     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2607218..2617754
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HT750_RS12780 (HT750_12780) soxR 2608946..2609410 (-) 465 WP_000412436.1 redox-sensitive transcriptional activator SoxR -
  HT750_RS12785 (HT750_12785) soxS 2609496..2609819 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  HT750_RS12790 (HT750_12790) pdeC 2609822..2611408 (-) 1587 WP_000019512.1 c-di-GMP phosphodiesterase PdeC -
  HT750_RS12795 (HT750_12795) yjcB 2611838..2612119 (+) 282 WP_001295689.1 YjcB family protein -
  HT750_RS12800 (HT750_12800) ssb 2612218..2612754 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  HT750_RS12805 (HT750_12805) uvrA 2613009..2615831 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  HT750_RS12810 (HT750_12810) yjbR 2615866..2616222 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  HT750_RS12815 (HT750_12815) yjbQ 2616226..2616642 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  HT750_RS12820 (HT750_12820) aphA 2616753..2617466 (-) 714 WP_001226928.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=453238 HT750_RS12800 WP_000168305.1 2612218..2612754(-) (ssb) [Escherichia coli strain LWY24]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=453238 HT750_RS12800 WP_000168305.1 2612218..2612754(-) (ssb) [Escherichia coli strain LWY24]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGACAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTAGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGTTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489