Detailed information    

insolico Bioinformatically predicted

Overview

Name   comW   Type   Regulator
Locus tag   I6H77_RS09360 Genome accession   NZ_CP066021
Coordinates   831341..831577 (-) Length   78 a.a.
NCBI ID   WP_000939512.1    Uniprot ID   -
Organism   Streptococcus oralis strain FDAARGOS_1020     
Function   stabilization and activation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 826341..836577
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H77_RS04055 (I6H77_04055) radA 826597..827958 (-) 1362 WP_078232941.1 DNA repair protein RadA Machinery gene
  I6H77_RS04060 (I6H77_04060) - 827972..828511 (-) 540 WP_002874984.1 histidine phosphatase family protein -
  I6H77_RS04065 (I6H77_04065) - 828513..828956 (-) 444 WP_000701998.1 dUTP diphosphatase -
  I6H77_RS04075 (I6H77_04075) tadA 829145..829612 (-) 468 WP_001110101.1 tRNA adenosine(34) deaminase TadA -
  I6H77_RS04080 (I6H77_04080) - 829813..831099 (-) 1287 WP_000205048.1 adenylosuccinate synthase -
  I6H77_RS09360 comW 831341..831577 (-) 237 WP_000939512.1 sigma(X)-activator ComW Regulator

Sequence

Protein


Download         Length: 78 a.a.        Molecular weight: 9526.09 Da        Isoelectric Point: 9.3157

>NTDB_id=453042 I6H77_RS09360 WP_000939512.1 831341..831577(-) (comW) [Streptococcus oralis strain FDAARGOS_1020]
MLQKFYDRAFVFLKLVEQEYASLGQSCSEWESLHLRFLLYYLIRFKIKSDRDFSLYHFRTAYRLYLDKLLQGGTTLIQ

Nucleotide


Download         Length: 237 bp        

>NTDB_id=453042 I6H77_RS09360 WP_000939512.1 831341..831577(-) (comW) [Streptococcus oralis strain FDAARGOS_1020]
ATGCTTCAGAAATTTTATGATCGAGCATTCGTCTTTTTGAAACTAGTTGAACAAGAATATGCCTCTTTAGGCCAGAGTTG
TTCAGAGTGGGAATCACTTCATCTCCGTTTTTTACTATATTACTTAATCCGATTTAAAATTAAAAGTGATAGGGACTTTT
CTCTATATCACTTTAGAACAGCTTATCGTCTATATCTAGATAAATTACTGCAAGGTGGTACAACTCTCATCCAATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comW Streptococcus mitis NCTC 12261

48.571

89.744

0.436
  comW Streptococcus mitis SK321

48.571

89.744

0.436
  comW Streptococcus pneumoniae Rx1

45.714

89.744

0.41
  comW Streptococcus pneumoniae D39

45.714

89.744

0.41
  comW Streptococcus pneumoniae R6

45.714

89.744

0.41
  comW Streptococcus pneumoniae TIGR4

45.714

89.744

0.41