Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   I6H77_RS04860 Genome accession   NZ_CP066021
Coordinates   999649..1000242 (+) Length   197 a.a.
NCBI ID   WP_000273401.1    Uniprot ID   -
Organism   Streptococcus oralis strain FDAARGOS_1020     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 994649..1005242
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H77_RS04840 (I6H77_04840) - 995787..996245 (-) 459 WP_000743977.1 DUF3021 domain-containing protein -
  I6H77_RS04845 (I6H77_04845) - 996242..996682 (-) 441 WP_000861947.1 LytTR family DNA-binding domain-containing protein -
  I6H77_RS04850 (I6H77_04850) hexB 996891..998840 (+) 1950 WP_000018214.1 DNA mismatch repair endonuclease MutL Machinery gene
  I6H77_RS04855 (I6H77_04855) - 998993..999490 (-) 498 WP_000761362.1 helix-turn-helix domain-containing protein -
  I6H77_RS04860 (I6H77_04860) ruvA 999649..1000242 (+) 594 WP_000273401.1 Holliday junction branch migration protein RuvA Machinery gene
  I6H77_RS04865 (I6H77_04865) - 1000252..1000812 (+) 561 WP_001126059.1 DNA-3-methyladenine glycosylase I -
  I6H77_RS04870 (I6H77_04870) - 1000813..1001487 (+) 675 WP_000987418.1 CPBP family intramembrane glutamic endopeptidase -
  I6H77_RS04875 (I6H77_04875) - 1001559..1001822 (-) 264 WP_000166112.1 SemiSWEET family transporter -
  I6H77_RS04880 (I6H77_04880) - 1001896..1002930 (-) 1035 WP_025169048.1 S66 family peptidase -
  I6H77_RS04885 (I6H77_04885) - 1003251..1003598 (-) 348 WP_000331830.1 TfoX/Sxy family protein -
  I6H77_RS04890 (I6H77_04890) - 1003614..1004291 (-) 678 WP_000078003.1 DUF1129 domain-containing protein -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21754.21 Da        Isoelectric Point: 6.2573

>NTDB_id=453003 I6H77_RS04860 WP_000273401.1 999649..1000242(+) (ruvA) [Streptococcus oralis strain FDAARGOS_1020]
MYEYLKGIITKITAKYIILEANGIGYILHVANPYAYSGQVNQETQIYVHQVVREDAHLLYGFRSEDEKKLFLSLISVSGI
GPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKTAQQMVLDLEGKVVVASDDLPSKVAVQTSAENQELEEAMEAM
LALGYKATELKKIKKFFEGTTDTAENYIKSALKMLVK

Nucleotide


Download         Length: 594 bp        

>NTDB_id=453003 I6H77_RS04860 WP_000273401.1 999649..1000242(+) (ruvA) [Streptococcus oralis strain FDAARGOS_1020]
ATGTACGAATATTTAAAAGGAATCATTACCAAAATCACTGCTAAATATATCATCCTTGAGGCAAATGGTATCGGTTATAT
CTTGCATGTAGCCAATCCCTATGCCTACTCAGGTCAGGTCAATCAAGAAACTCAGATTTATGTGCACCAAGTTGTTCGTG
AGGATGCCCATCTGCTCTACGGTTTTCGCTCAGAAGATGAGAAAAAGCTCTTTCTCAGTCTGATCTCGGTCTCAGGGATT
GGTCCTGTGTCAGCTCTTGCTATCATCGCAGCTGATGACAATGCTGGCTTGGTTCAAGCGATCGAGACTAAGAACATCAC
CTACTTGACCAAGTTCCCTAAAATTGGCAAGAAAACAGCCCAGCAGATGGTGCTGGACTTGGAAGGCAAGGTAGTCGTGG
CTAGTGATGACCTTCCTTCCAAGGTCGCAGTGCAAACCAGCGCTGAAAACCAAGAACTGGAAGAAGCTATGGAAGCCATG
CTGGCACTGGGCTACAAGGCGACTGAACTTAAGAAAATCAAGAAATTCTTTGAAGGAACGACGGATACAGCAGAGAACTA
TATCAAGTCGGCCCTTAAGATGTTGGTCAAATAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

96.447

100

0.964
  ruvA Streptococcus pneumoniae R6

95.939

100

0.959
  ruvA Streptococcus pneumoniae D39

95.939

100

0.959
  ruvA Bacillus subtilis subsp. subtilis str. 168

40.291

100

0.421