Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   HPAKL117_RS04190 Genome accession   NC_019560
Coordinates   875855..876406 (-) Length   183 a.a.
NCBI ID   WP_000635144.1    Uniprot ID   -
Organism   Helicobacter pylori Aklavik117     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 870855..881406
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPAKL117_RS08450 (HPAKL117_04215) - 871316..871573 (-) 258 WP_015085937.1 hypothetical protein -
  HPAKL117_RS08455 (HPAKL117_04220) - 871588..871791 (-) 204 WP_015085938.1 hypothetical protein -
  HPAKL117_RS04180 (HPAKL117_04225) - 871865..872266 (-) 402 Protein_821 PBECR2 nuclease fold domain-containing protein -
  HPAKL117_RS08690 - 872342..872537 (-) 196 Protein_822 hypothetical protein -
  HPAKL117_RS04185 (HPAKL117_04230) - 872497..875805 (-) 3309 WP_235043931.1 DUF3519 domain-containing protein -
  HPAKL117_RS04190 (HPAKL117_04235) ruvA 875855..876406 (-) 552 WP_000635144.1 Holliday junction branch migration protein RuvA Machinery gene
  HPAKL117_RS04195 (HPAKL117_04240) - 876431..878269 (-) 1839 WP_015085941.1 FapA family protein -
  HPAKL117_RS04200 (HPAKL117_04245) murJ 878362..879822 (+) 1461 WP_015085942.1 murein biosynthesis integral membrane protein MurJ -
  HPAKL117_RS04205 (HPAKL117_04250) cysS 879823..881220 (+) 1398 WP_015085943.1 cysteine--tRNA ligase -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20148.73 Da        Isoelectric Point: 9.4311

>NTDB_id=45298 HPAKL117_RS04190 WP_000635144.1 875855..876406(-) (ruvA) [Helicobacter pylori Aklavik117]
MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRTSALLQAGQKARLKILQVIKEDAHLLYGFLEESEKILFERLLKINGV
GGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIGFFIQDETSPARNEVFLALESLGFKSAEINKV
LKTLKPHLSTEAAIKEALQQLRS

Nucleotide


Download         Length: 552 bp        

>NTDB_id=45298 HPAKL117_RS04190 WP_000635144.1 875855..876406(-) (ruvA) [Helicobacter pylori Aklavik117]
ATGATAGTGGGTTTGATAGGGGTTGTGGAAAAAATCTCTGCTTTAGAAGCGCATATAGAAGTGCAAGGGGTTGTTTATGG
GGTGCAAGTTTCTATGCGAACTTCTGCTTTGCTCCAAGCGGGCCAAAAAGCGCGTTTGAAAATCTTACAAGTGATTAAAG
AAGATGCGCATCTTTTATACGGGTTTTTAGAAGAGAGCGAAAAAATCCTCTTTGAAAGGCTTTTAAAAATCAATGGGGTA
GGGGGGCGTATCGCTTTAGCCATTCTTTCAAGCTTTTCGCCGAATGAATTTGAAAACATTATCGCCACTAAAGAAGTCAA
AAGACTCCAACAAGTCCCAGGCATAGGCAAAAAGCTCGCTGATAAGATCATGGTGGATTTGATTGGTTTTTTCATTCAAG
ATGAAACCAGCCCTGCACGCAATGAAGTCTTTTTAGCCCTAGAGAGTTTGGGCTTTAAAAGCGCTGAAATCAATAAAGTT
TTAAAAACCCTAAAACCCCATCTCAGCACCGAAGCAGCGATTAAAGAAGCCTTACAACAACTGCGCTCTTAA

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA, C-terminal domain (RuvA_C)

(139-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Helicobacter pylori 26695

94.536

100

0.945
  ruvA Bacillus subtilis subsp. subtilis str. 168

32.836

100

0.361
  ruvA Streptococcus pneumoniae TIGR4

33.846

100

0.361
  ruvA Streptococcus pneumoniae R6

33.846

100

0.361
  ruvA Streptococcus pneumoniae D39

33.846

100

0.361

Multiple sequence alignment