Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HUE57_RS07290 Genome accession   NZ_CP054491
Coordinates   1282879..1283352 (+) Length   157 a.a.
NCBI ID   WP_078483980.1    Uniprot ID   A0A1T2L3Z3
Organism   Candidatus Reidiella endopervernicosa isolate Santa_Monica_outfall     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1277879..1288352
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUE57_RS07280 (HUE57_07280) uvrA 1278503..1281340 (-) 2838 WP_078483978.1 excinuclease ABC subunit UvrA -
  HUE57_RS07285 (HUE57_07285) - 1281409..1282803 (+) 1395 WP_078483979.1 MFS transporter -
  HUE57_RS07290 (HUE57_07290) ssb 1282879..1283352 (+) 474 WP_078483980.1 single-stranded DNA-binding protein Machinery gene
  HUE57_RS07295 (HUE57_07295) rfbB 1283385..1284458 (+) 1074 WP_078483209.1 dTDP-glucose 4,6-dehydratase -
  HUE57_RS07300 (HUE57_07300) rfbA 1284455..1285333 (+) 879 WP_078483208.1 glucose-1-phosphate thymidylyltransferase RfbA -
  HUE57_RS07305 (HUE57_07305) rfbC 1285330..1285893 (+) 564 WP_078483207.1 dTDP-4-dehydrorhamnose 3,5-epimerase -
  HUE57_RS07310 (HUE57_07310) rfbD 1285902..1286795 (+) 894 WP_078483206.1 dTDP-4-dehydrorhamnose reductase -
  HUE57_RS07315 (HUE57_07315) miaB 1286856..1288202 (+) 1347 WP_078483205.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16650.28 Da        Isoelectric Point: 5.7613

>NTDB_id=452870 HUE57_RS07290 WP_078483980.1 1282879..1283352(+) (ssb) [Candidatus Reidiella endopervernicosa isolate Santa_Monica_outfall]
MARGINKAILIGNLGKDPEVRYTAGGSAVANITLATTESRKDRQSGQWTEHTEWHRVVLFGKTAETAGEYLRKGSQVYIE
GRIQTSKWQDKSGQDRYTTEVVANTMQMLGGRGGGGAGNFSQDDRGQSAPAAAPASAPAAAPAGGGNFDDFDDDIPF

Nucleotide


Download         Length: 474 bp        

>NTDB_id=452870 HUE57_RS07290 WP_078483980.1 1282879..1283352(+) (ssb) [Candidatus Reidiella endopervernicosa isolate Santa_Monica_outfall]
ATGGCACGCGGAATTAACAAGGCAATACTGATCGGCAACCTGGGCAAAGATCCCGAGGTGCGTTACACAGCGGGCGGCTC
TGCGGTGGCAAATATCACCCTGGCGACGACTGAATCGAGAAAGGATCGTCAGAGTGGCCAGTGGACGGAGCATACCGAGT
GGCACCGTGTGGTTCTCTTCGGCAAAACCGCCGAGACGGCAGGCGAGTACCTACGCAAAGGCTCGCAGGTCTATATCGAG
GGACGTATTCAGACCAGCAAGTGGCAGGATAAAAGTGGCCAGGATCGCTATACCACTGAGGTTGTCGCGAATACGATGCA
GATGCTGGGTGGACGTGGAGGCGGCGGTGCCGGAAACTTCAGTCAGGATGATCGTGGTCAGTCAGCACCAGCGGCTGCGC
CCGCATCGGCGCCCGCAGCCGCCCCTGCCGGTGGCGGCAACTTCGACGACTTCGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1T2L3Z3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

53.714

100

0.599
  ssb Neisseria meningitidis MC58

45.087

100

0.497
  ssb Neisseria gonorrhoeae MS11

45.087

100

0.497
  ssb Glaesserella parasuis strain SC1401

42.697

100

0.484