Detailed information
Bioinformatically predicted
Overview
| Name | ruvB | Type | Machinery gene |
| Locus tag | HPAKL117_RS01900 | Genome accession | NC_019560 |
| Coordinates | 384283..385293 (-) | Length | 336 a.a. |
| NCBI ID | WP_015085567.1 | Uniprot ID | - |
| Organism | Helicobacter pylori Aklavik117 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 379283..390293
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPAKL117_RS01855 (HPAKL117_01850) | - | 379363..379737 (-) | 375 | WP_000772153.1 | chemotaxis response regulator CheY | - |
| HPAKL117_RS01860 (HPAKL117_01855) | - | 380028..380630 (+) | 603 | WP_000291637.1 | outer membrane protein | - |
| HPAKL117_RS01870 (HPAKL117_01860) | - | 380762..381169 (-) | 408 | WP_015085562.1 | hypothetical protein | - |
| HPAKL117_RS01875 (HPAKL117_01865) | - | 381172..381414 (-) | 243 | WP_000944388.1 | PP0621 family protein | - |
| HPAKL117_RS01880 (HPAKL117_01870) | rsmG | 381408..381944 (-) | 537 | WP_015085563.1 | 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG | - |
| HPAKL117_RS01885 (HPAKL117_01875) | queA | 381941..382978 (-) | 1038 | WP_015085564.1 | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | - |
| HPAKL117_RS01890 (HPAKL117_01880) | tatC | 382979..383740 (-) | 762 | WP_015085565.1 | twin-arginine translocase subunit TatC | - |
| HPAKL117_RS01895 (HPAKL117_01885) | tatB | 383733..384215 (-) | 483 | WP_015085566.1 | Sec-independent protein translocase protein TatB | - |
| HPAKL117_RS01900 (HPAKL117_01890) | ruvB | 384283..385293 (-) | 1011 | WP_015085567.1 | Holliday junction branch migration DNA helicase RuvB | Machinery gene |
| HPAKL117_RS01905 (HPAKL117_01895) | panB | 385294..386106 (-) | 813 | WP_015085568.1 | 3-methyl-2-oxobutanoate hydroxymethyltransferase | - |
| HPAKL117_RS01910 (HPAKL117_01900) | - | 386256..386978 (+) | 723 | WP_000523341.1 | hypothetical protein | - |
| HPAKL117_RS01915 (HPAKL117_01905) | - | 386968..387822 (+) | 855 | WP_015085569.1 | outer membrane beta-barrel protein | - |
| HPAKL117_RS01920 (HPAKL117_01910) | - | 387831..388781 (+) | 951 | WP_041200001.1 | outer membrane protein | - |
| HPAKL117_RS01925 (HPAKL117_01915) | - | 388791..390113 (+) | 1323 | WP_015085571.1 | M23 family metallopeptidase | - |
Sequence
Protein
Download Length: 336 a.a. Molecular weight: 37349.35 Da Isoelectric Point: 6.0715
>NTDB_id=45283 HPAKL117_RS01900 WP_015085567.1 384283..385293(-) (ruvB) [Helicobacter pylori Aklavik117]
MKERIVNLETLDFETSQEVSLRPNLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN
IKITVAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATT
RAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAATKLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLM
DLNITLHALNELGVNELGFDEADLAYLSLLANAQGRPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATPK
THALLKIPTLNPQTLF
MKERIVNLETLDFETSQEVSLRPNLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN
IKITVAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATT
RAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAATKLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLM
DLNITLHALNELGVNELGFDEADLAYLSLLANAQGRPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATPK
THALLKIPTLNPQTLF
Nucleotide
Download Length: 1011 bp
>NTDB_id=45283 HPAKL117_RS01900 WP_015085567.1 384283..385293(-) (ruvB) [Helicobacter pylori Aklavik117]
ATGAAAGAACGGATAGTCAATTTAGAAACTTTGGATTTTGAAACTTCTCAAGAAGTGAGTTTGCGCCCTAATCTTTGGGA
AGATTTTATCGGTCAAGAAAAGATTAAAAGCAATTTGCAAATTTCTATTTGCGCGGCTAAAAAACGCCAAGAAAGTTTGG
ATCACATGCTCTTTTTTGGCCCGCCCGGTTTGGGTAAAACTTCAATAAGCCATATCATCGCTAAAGAAATGGAAACCAAT
ATCAAAATCACCGTCGCTCCCATGATAGAAAAAAGCGGTGATTTGGCCGCCATTTTGACGAATTTGCAAGCTAAAGACAT
TCTTTTTATTGATGAAATCCACCGGCTTAGCCCAGCGATTGAAGAGGTTTTATACCCGGCTATGGAAGATTTTAGATTGG
ATATTATCATAGGATCAGGCCCAGCGGCTCAAACCATTAAAATTGATTTGCCCCCTTTCACCCTCATCGGCGCTACCACC
AGAGCCGGAATGCTCTCTAACCCCTTAAGAGACAGATTTGGCATGAGCTTTAGGATGCAATTTTATAGCCCTAGCGAACT
GGCCCTTATCATCAAAAAAGCCGCCACCAAACTCAACCAAGACATCAAAGAAGAAAGCGCTGACGAAATCGCTAAAAGGA
GTAGAGGCACGCCAAGGATCGCTTTAAGGCTTTTAAAAAGGGTGCGCGATTTTGCGTTAGTCAAAAATTCAAGCTTGATG
GATTTAAACATCACTTTGCATGCTTTGAATGAATTAGGCGTGAATGAATTAGGCTTTGATGAAGCGGATTTGGCGTATTT
GTCTTTGTTGGCTAACGCTCAAGGACGACCGGTGGGTTTGAACACAATTGCTGCATCTATGAGAGAAGATGAAGGCACGA
TTGAAGATGTGATTGAGCCTTTTTTACTCGCTAATGGCTATTTAGAGCGCACAGCTAAAGGCAGAATCGCCACGCCTAAA
ACCCATGCGCTTTTAAAAATCCCCACTTTAAACCCCCAAACTTTATTTTAA
ATGAAAGAACGGATAGTCAATTTAGAAACTTTGGATTTTGAAACTTCTCAAGAAGTGAGTTTGCGCCCTAATCTTTGGGA
AGATTTTATCGGTCAAGAAAAGATTAAAAGCAATTTGCAAATTTCTATTTGCGCGGCTAAAAAACGCCAAGAAAGTTTGG
ATCACATGCTCTTTTTTGGCCCGCCCGGTTTGGGTAAAACTTCAATAAGCCATATCATCGCTAAAGAAATGGAAACCAAT
ATCAAAATCACCGTCGCTCCCATGATAGAAAAAAGCGGTGATTTGGCCGCCATTTTGACGAATTTGCAAGCTAAAGACAT
TCTTTTTATTGATGAAATCCACCGGCTTAGCCCAGCGATTGAAGAGGTTTTATACCCGGCTATGGAAGATTTTAGATTGG
ATATTATCATAGGATCAGGCCCAGCGGCTCAAACCATTAAAATTGATTTGCCCCCTTTCACCCTCATCGGCGCTACCACC
AGAGCCGGAATGCTCTCTAACCCCTTAAGAGACAGATTTGGCATGAGCTTTAGGATGCAATTTTATAGCCCTAGCGAACT
GGCCCTTATCATCAAAAAAGCCGCCACCAAACTCAACCAAGACATCAAAGAAGAAAGCGCTGACGAAATCGCTAAAAGGA
GTAGAGGCACGCCAAGGATCGCTTTAAGGCTTTTAAAAAGGGTGCGCGATTTTGCGTTAGTCAAAAATTCAAGCTTGATG
GATTTAAACATCACTTTGCATGCTTTGAATGAATTAGGCGTGAATGAATTAGGCTTTGATGAAGCGGATTTGGCGTATTT
GTCTTTGTTGGCTAACGCTCAAGGACGACCGGTGGGTTTGAACACAATTGCTGCATCTATGAGAGAAGATGAAGGCACGA
TTGAAGATGTGATTGAGCCTTTTTTACTCGCTAATGGCTATTTAGAGCGCACAGCTAAAGGCAGAATCGCCACGCCTAAA
ACCCATGCGCTTTTAAAAATCCCCACTTTAAACCCCCAAACTTTATTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvB | Helicobacter pylori 26695 |
97.619 |
100 |
0.976 |
| ruvB | Bacillus subtilis subsp. subtilis str. 168 |
53.56 |
96.131 |
0.515 |
| ruvB | Streptococcus pneumoniae TIGR4 |
50.464 |
96.131 |
0.485 |
| ruvB | Streptococcus pneumoniae R6 |
50.464 |
96.131 |
0.485 |
| ruvB | Streptococcus pneumoniae D39 |
50.464 |
96.131 |
0.485 |
| ruvB | Synechocystis sp. PCC 6803 |
50.473 |
94.345 |
0.476 |