Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   I6H76_RS05450 Genome accession   NZ_CP065994
Coordinates   1063086..1064084 (-) Length   332 a.a.
NCBI ID   WP_006531310.1    Uniprot ID   A0ABM9XGB3
Organism   Streptococcus infantarius strain FDAARGOS_1019     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1058086..1069084
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H76_RS05430 (I6H76_05430) - 1059524..1061317 (-) 1794 WP_006531315.1 acyltransferase family protein -
  I6H76_RS05435 (I6H76_05435) - 1061314..1061694 (-) 381 WP_006531314.1 membrane protein -
  I6H76_RS05440 (I6H76_05440) - 1061712..1062143 (-) 432 Protein_1051 low molecular weight protein-tyrosine-phosphatase -
  I6H76_RS10400 (I6H76_05445) - 1062382..1062750 (-) 369 WP_006531312.1 DUF7010 family protein -
  I6H76_RS10065 - 1062707..1062913 (-) 207 WP_006531311.1 DUF7010 family protein -
  I6H76_RS05450 (I6H76_05450) ruvB 1063086..1064084 (-) 999 WP_006531310.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  I6H76_RS05455 (I6H76_05455) comR 1064286..1065164 (-) 879 WP_174221231.1 Cro/Cl family transcriptional regulator Regulator
  I6H76_RS05460 (I6H76_05460) purB 1065353..1066651 (-) 1299 WP_006531307.1 adenylosuccinate lyase -
  I6H76_RS10070 - 1066741..1066836 (-) 96 Protein_1057 phosphoribosylaminoimidazole carboxylase -
  I6H76_RS05465 (I6H76_05465) purK 1066839..1067930 (-) 1092 WP_006531306.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  I6H76_RS05470 (I6H76_05470) purE 1067917..1068405 (-) 489 WP_006531305.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  I6H76_RS05475 (I6H76_05475) - 1068405..1068811 (-) 407 Protein_1060 DUF523 domain-containing protein -

Sequence

Protein


Download         Length: 332 a.a.        Molecular weight: 37404.88 Da        Isoelectric Point: 4.6106

>NTDB_id=452816 I6H76_RS05450 WP_006531310.1 1063086..1064084(-) (ruvB) [Streptococcus infantarius strain FDAARGOS_1019]
MNRILDNDIMGDEEFVERTLRPQYLKEYIGQDKVKNQLKIFIEAAKLRDESLDHVLLFGPPGLGKTTMAFVIANELGVNL
KQTSGPAIEKAGDLVAILNDLEPGDVLFIDEIHRMPMAVEEVLYSAMEDFYIDIMIGNGETSRSVHLDLPPFTLIGATTR
AGMLSNPLRARFGITGHMEYYAVDDLTEIVERTADIFEMEIVHEAAQELARRSRGTPRIANRLLKRVRDYAQIMGDGIIT
KDITDKALTMLDVDHEGLDYIDQKILRTMIEVYNGGPVGLGTLSVNIAEERDTVEDMYEPYLIQKGFIMRTRTGRVATAK
AYDHLGYPYAEK

Nucleotide


Download         Length: 999 bp        

>NTDB_id=452816 I6H76_RS05450 WP_006531310.1 1063086..1064084(-) (ruvB) [Streptococcus infantarius strain FDAARGOS_1019]
ATGAATAGAATTTTAGATAATGATATCATGGGTGACGAAGAATTTGTGGAACGTACGCTTCGTCCTCAATATTTAAAAGA
ATATATTGGACAGGATAAGGTTAAAAATCAGCTGAAAATTTTTATTGAAGCAGCAAAATTACGTGATGAATCACTTGACC
ATGTGCTATTGTTTGGCCCTCCGGGTCTTGGTAAGACGACAATGGCATTTGTGATTGCTAACGAATTAGGGGTGAATCTC
AAACAAACATCTGGGCCAGCAATTGAAAAAGCTGGTGATTTGGTTGCTATTTTGAATGATTTGGAACCTGGGGATGTTTT
GTTTATCGATGAAATTCACCGTATGCCAATGGCGGTAGAAGAAGTGCTCTATAGTGCGATGGAAGATTTCTATATTGACA
TTATGATTGGTAATGGTGAGACTAGTCGTAGTGTCCATTTGGATTTGCCACCTTTTACGCTAATTGGAGCAACAACTCGA
GCAGGAATGCTTTCGAATCCGTTGCGTGCGCGTTTTGGAATTACGGGGCATATGGAATATTATGCGGTTGACGATTTGAC
AGAAATTGTTGAACGTACAGCTGATATTTTTGAAATGGAAATCGTGCATGAAGCTGCACAAGAATTGGCGCGACGTAGCC
GAGGTACACCACGTATTGCCAACCGTTTGTTAAAACGGGTTCGTGACTATGCTCAAATTATGGGTGATGGTATTATTACA
AAAGATATTACAGATAAAGCTTTAACAATGCTGGATGTCGATCATGAAGGGCTTGATTACATTGACCAAAAAATCTTGCG
TACTATGATTGAAGTTTATAATGGTGGTCCAGTTGGTTTGGGAACTCTATCTGTTAATATTGCTGAAGAGCGTGATACGG
TTGAGGATATGTATGAACCTTATTTGATTCAAAAGGGTTTTATTATGCGTACACGTACAGGTCGTGTAGCTACAGCTAAA
GCATATGATCATCTGGGGTATCCTTATGCTGAAAAATAA

Domains

Predicted by InterProScan.

RuvB C-terminal winged helix domain (WHD_RuvB)

(256-325)

RuvB AAA lid domain (AAA_lid_4)

(181-254)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(20-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Streptococcus pneumoniae TIGR4

89.759

100

0.898
  ruvB Streptococcus pneumoniae R6

89.759

100

0.898
  ruvB Streptococcus pneumoniae D39

89.759

100

0.898
  ruvB Bacillus subtilis subsp. subtilis str. 168

61.61

97.289

0.599
  ruvB Helicobacter pylori 26695

49.693

98.193

0.488
  ruvB Synechocystis sp. PCC 6803

49.84

94.277

0.47