Detailed information NTG0045277

Bioinformatically predicted

Overview

• Name: comFC
• Type: Machinery gene
• Locus tag: LL3_RS17585
• Genome accession: NC_017190
• Coordinates: 3456587..3457276 (-)
• Length: 229 a.a.
• NCBI ID: WP_198315882.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens LL3
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3451587..3462276

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LL3_RS17550 (LL3_03673)	fliW	3451677..3452108 (-)	432	WP_007407475.1	flagellar assembly protein FliW	-
LL3_RS17555 (LL3_03674)	-	3452138..3452707 (-)	570	WP_014471091.1	DUF6470 family protein	-
LL3_RS17560 (LL3_03675)	flgL	3452799..3453716 (-)	918	WP_013353778.1	flagellar hook-associated protein FlgL	-
LL3_RS17565 (LL3_03676)	flgK	3453728..3455245 (-)	1518	WP_014471092.1	flagellar hook-associated protein FlgK	-
LL3_RS17570 (LL3_03677)	-	3455261..3455743 (-)	483	WP_013353780.1	flagellar protein FlgN	-
LL3_RS17575 (LL3_03678)	flgM	3455758..3456024 (-)	267	WP_013353781.1	flagellar biosynthesis anti-sigma factor FlgM	-
LL3_RS17580 (LL3_03679)	-	3456094..3456513 (-)	420	WP_013353782.1	TIGR03826 family flagellar region protein	-
LL3_RS17585 (LL3_03680)	comFC	3456587..3457276 (-)	690	WP_198315882.1	ComF family protein	Machinery gene
LL3_RS17590 (LL3_03681)	-	3457282..3457566 (-)	285	WP_013353784.1	late competence development ComFB family protein	-
LL3_RS17595 (LL3_03682)	comFA	3457625..3459010 (-)	1386	WP_013353785.1	DEAD/DEAH box helicase	Machinery gene
LL3_RS17600 (LL3_03683)	-	3459117..3459965 (-)	849	WP_013353786.1	DegV family protein	-
LL3_RS17605 (LL3_03684)	degU	3460062..3460751 (-)	690	WP_003219701.1	two-component system response regulator DegU	Regulator
LL3_RS17610 (LL3_03685)	degS	3460828..3461991 (-)	1164	WP_013353787.1	two-component sensor histidine kinase DegS	Regulator

Sequence

Protein

• Length: 229 a.a.
• Molecular weight: 25295.06 Da
• Isoelectric Point: 8.6865

>NTDB_id=45277 LL3_RS17585 WP_198315882.1 3456587..3457276(-) (comFC) [Bacillus amyloliquefaciens LL3]
MNCLLCDSPISRSLTWSSLFSLAPEQEVCSACSNQFEKIEGPVCSLCGRPQQSNKKCADCMARESKTEQRFLLRQNRSVF
LYNDAMKDSLARFKFRGDTKIIQTFERDFTAGFKAAYPANTHILVPIPLSPERLAERGFNQSELLASLLGMPVISPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAGALLTAGKALSVSSFTLIRS

Nucleotide

• Length: 690 bp

>NTDB_id=45277 LL3_RS17585 WP_198315882.1 3456587..3457276(-) (comFC) [Bacillus amyloliquefaciens LL3]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGATCACTGACTTGGAGTTCTCTATTTTCTCTGGCGCCGGAGCAAGA
GGTATGCAGCGCATGCAGCAATCAATTTGAAAAAATCGAAGGCCCCGTGTGCAGTTTATGCGGAAGGCCTCAGCAGTCAA
ACAAAAAATGCGCTGACTGCATGGCGCGGGAATCAAAAACGGAACAGCGCTTTTTGTTGCGGCAGAACCGTTCGGTTTTT
TTGTATAATGATGCAATGAAGGACTCATTGGCCCGGTTTAAATTCAGGGGTGATACGAAAATCATTCAAACATTTGAACG
TGATTTTACTGCCGGCTTTAAAGCGGCATATCCGGCAAATACACATATCCTCGTCCCTATTCCGCTGAGCCCCGAACGGC
TGGCGGAGCGCGGATTTAATCAATCCGAGCTGCTGGCCTCGCTGCTCGGAATGCCCGTCATTTCCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTCTCCGCAGAAAAAAAGTTTTCAGCTGCCGAAAACTCCGC
CGAAGGTATGAACGTCATTTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCTGCCGGAGCTCTGCTGA
CAGCAGGCAAAGCGTTATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

• Phosphoribosyl transferase domain (Pribosyltran) (171-227)

• Double zinc ribbon domain (DZR_2) (2-61)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFC	Bacillus subtilis subsp. subtilis str. 168	59.471	99.127	0.59
comFC/cflB	Streptococcus mitis NCTC 12261	36.245	100	0.362
comFC/cflB	Streptococcus pneumoniae Rx1	35.931	100	0.362
comFC/cflB	Streptococcus pneumoniae D39	35.931	100	0.362
comFC/cflB	Streptococcus pneumoniae R6	35.931	100	0.362