Detailed information NTG0045280

Bioinformatically predicted

Overview

• Name: degS
• Type: Regulator
• Locus tag: LL3_RS17610
• Genome accession: NC_017190
• Coordinates: 3460828..3461991 (-)
• Length: 387 a.a.
• NCBI ID: WP_013353787.1
• Uniprot ID: A0A9P1JKJ4
• Organism: Bacillus amyloliquefaciens LL3
• Function: phosphorylation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 3455828..3466991

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LL3_RS17580 (LL3_03679)	-	3456094..3456513 (-)	420	WP_013353782.1	TIGR03826 family flagellar region protein	-
LL3_RS17585 (LL3_03680)	comFC	3456587..3457276 (-)	690	WP_198315882.1	ComF family protein	Machinery gene
LL3_RS17590 (LL3_03681)	-	3457282..3457566 (-)	285	WP_013353784.1	late competence development ComFB family protein	-
LL3_RS17595 (LL3_03682)	comFA	3457625..3459010 (-)	1386	WP_013353785.1	DEAD/DEAH box helicase	Machinery gene
LL3_RS17600 (LL3_03683)	-	3459117..3459965 (-)	849	WP_013353786.1	DegV family protein	-
LL3_RS17605 (LL3_03684)	degU	3460062..3460751 (-)	690	WP_003219701.1	two-component system response regulator DegU	Regulator
LL3_RS17610 (LL3_03685)	degS	3460828..3461991 (-)	1164	WP_013353787.1	two-component sensor histidine kinase DegS	Regulator
LL3_RS17615 (LL3_03686)	-	3462214..3462861 (+)	648	WP_013353788.1	YigZ family protein	-
LL3_RS17620 (LL3_03687)	-	3462866..3464140 (+)	1275	WP_013353789.1	LCP family protein	-
LL3_RS17625 (LL3_03688)	-	3464240..3465316 (-)	1077	WP_013353790.1	glycosyltransferase family 4 protein	-
LL3_RS17630 (LL3_03689)	-	3465449..3466645 (-)	1197	WP_013353791.1	glycosyltransferase	-

Sequence

Protein

• Length: 387 a.a.
• Molecular weight: 45028.85 Da
• Isoelectric Point: 7.1379

>NTDB_id=45280 LL3_RS17610 WP_013353787.1 3460828..3461991(-) (degS) [Bacillus amyloliquefaciens LL3]
MNKSKMDSKVLDSILMKMLKTVDGSKDEVFQIGEQSRQQYEQLVEELKQIKQQVYEVIELGDKLEVHTRHARNRLSEVSR
NFHKFSEEEIRNAYEKAHKLQVELTMIQQREKQLRERRDDLERRLLGLQEIIERSESLVSQITVVLNYLNQDLRQVGLLL
ADAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGTEDGFQEIRNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLYTTEEYNGKVKIHFQCIGDTENKRLAPQFEVALFRLAQEAVTNALKHSESEEITVKVEV
TADFVVLIIKDNGKGFDIKEAKQKKNKSFGLLGMKERVDLLEGTITIDSKLGLGTFIMIKVPLSLGL

Nucleotide

• Length: 1164 bp

>NTDB_id=45280 LL3_RS17610 WP_013353787.1 3460828..3461991(-) (degS) [Bacillus amyloliquefaciens LL3]
ATGAATAAATCGAAGATGGACTCCAAAGTTTTGGATTCTATACTTATGAAAATGCTGAAAACCGTGGACGGGAGTAAGGA
CGAGGTTTTTCAAATCGGAGAGCAGTCGCGCCAGCAATATGAGCAGCTGGTCGAAGAACTCAAACAGATCAAACAGCAGG
TGTACGAAGTCATTGAGCTGGGCGACAAACTCGAAGTACATACCCGGCATGCAAGAAACCGCTTGTCGGAAGTAAGCAGA
AATTTCCATAAGTTCAGCGAAGAAGAAATTCGCAACGCCTATGAAAAGGCGCACAAACTTCAAGTGGAACTGACGATGAT
CCAGCAGCGTGAAAAGCAGCTGCGGGAGCGCAGAGATGATTTAGAACGCCGGCTTTTGGGGCTTCAGGAAATCATTGAAC
GGTCAGAATCATTGGTCAGCCAAATAACCGTCGTTCTGAATTACCTGAATCAAGACCTTCGCCAAGTAGGGCTTCTGCTT
GCCGATGCGCAGGCTAAACAAGATTTCGGTTTAAGAATTATCGAAGCCCAGGAGGAAGAAAGAAAAAGAGTTTCCAGAGA
AATTCATGACGGTCCGGCTCAAATGCTGGCAAATGTTATGATGAGATCGGAATTGATAGAACGGATCTTCCGCGACCGCG
GCACGGAGGACGGCTTTCAGGAAATCAGAAATCTTCGCCAGAATGTGCGGAATGCTCTTTACGAAGTCAGAAGGATTATA
TATGATTTAAGACCGATGGCATTGGACGATCTCGGGCTGATTCCGACACTGAGAAAATATCTTTATACAACTGAAGAATA
CAACGGAAAGGTGAAAATACATTTTCAGTGCATCGGAGACACGGAGAACAAAAGGCTTGCCCCGCAATTTGAAGTGGCGC
TTTTCCGTCTCGCTCAGGAAGCCGTCACAAATGCGCTGAAGCATTCAGAATCAGAGGAAATTACAGTAAAAGTGGAAGTA
ACTGCTGATTTTGTGGTTCTTATTATTAAGGACAACGGAAAAGGCTTTGATATCAAGGAAGCTAAACAAAAGAAAAACAA
GTCATTCGGCTTGCTGGGAATGAAAGAAAGAGTAGATCTGCTCGAAGGAACGATAACGATAGACTCTAAACTAGGTCTTG
GGACATTTATCATGATTAAGGTTCCTTTATCTCTCGGCCTATAA

Domains

Predicted by InterproScan.

• Sensor protein DegS (DegS) (12-170)

• Histidine kinase (HisKA_3) (180-248)

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (291-384)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
degS	Bacillus subtilis subsp. subtilis str. 168	95.325	99.483	0.948