Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   HT132_RS03740 Genome accession   NZ_CP054479
Coordinates   706014..706703 (+) Length   229 a.a.
NCBI ID   WP_202729384.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain R8-25     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 701014..711703
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HT132_RS03715 (HT132_03715) degS 701298..702461 (+) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  HT132_RS03720 (HT132_03720) degU 702538..703227 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  HT132_RS03725 (HT132_03725) - 703325..704173 (+) 849 WP_003151387.1 DegV family protein -
  HT132_RS03730 (HT132_03730) comFA 704281..705666 (+) 1386 WP_174532388.1 DEAD/DEAH box helicase Machinery gene
  HT132_RS03735 (HT132_03735) - 705724..706008 (+) 285 WP_045209016.1 competence protein ComFB -
  HT132_RS03740 (HT132_03740) comFC 706014..706703 (+) 690 WP_202729384.1 phosphoribosyltransferase family protein Machinery gene
  HT132_RS03745 (HT132_03745) - 706777..707196 (+) 420 WP_061861586.1 TIGR03826 family flagellar region protein -
  HT132_RS03750 (HT132_03750) flgM 707266..707532 (+) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  HT132_RS03755 (HT132_03755) - 707547..708029 (+) 483 WP_003151394.1 flagellar protein FlgN -
  HT132_RS03760 (HT132_03760) flgK 708045..709562 (+) 1518 WP_014419008.1 flagellar hook-associated protein FlgK -
  HT132_RS03765 (HT132_03765) flgL 709574..710491 (+) 918 WP_014419007.1 flagellar hook-associated protein FlgL -
  HT132_RS03770 (HT132_03770) - 710582..711151 (+) 570 WP_003151397.1 DUF6470 family protein -
  HT132_RS03775 (HT132_03775) fliW 711181..711612 (+) 432 WP_007407475.1 flagellar assembly protein FliW -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25287.91 Da        Isoelectric Point: 8.2927

>NTDB_id=452755 HT132_RS03740 WP_202729384.1 706014..706703(+) (comFC) [Bacillus amyloliquefaciens strain R8-25]
MNCLLCDSPISSSLTWRSLFSLAPEQEICSICSSQFEKIEGPVCSICGRPRESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLSRFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVISPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=452755 HT132_RS03740 WP_202729384.1 706014..706703(+) (comFC) [Bacillus amyloliquefaciens strain R8-25]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GATATGCAGCATATGCAGCAGCCAATTCGAAAAAATTGAAGGTCCCGTATGCAGTATATGCGGGAGGCCTCGGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGTCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTCCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATCTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(166-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.352

99.127

0.598