Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   HT132_RS03720 Genome accession   NZ_CP054479
Coordinates   702538..703227 (+) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus amyloliquefaciens strain R8-25     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 697538..708227
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HT132_RS03700 (HT132_03700) - 698033..699109 (+) 1077 WP_003151382.1 glycosyltransferase family 4 protein -
  HT132_RS03705 (HT132_03705) - 699209..700423 (-) 1215 WP_022553868.1 LCP family protein -
  HT132_RS03710 (HT132_03710) - 700428..701075 (-) 648 WP_007407485.1 YigZ family protein -
  HT132_RS03715 (HT132_03715) degS 701298..702461 (+) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  HT132_RS03720 (HT132_03720) degU 702538..703227 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  HT132_RS03725 (HT132_03725) - 703325..704173 (+) 849 WP_003151387.1 DegV family protein -
  HT132_RS03730 (HT132_03730) comFA 704281..705666 (+) 1386 WP_174532388.1 DEAD/DEAH box helicase Machinery gene
  HT132_RS03735 (HT132_03735) - 705724..706008 (+) 285 WP_045209016.1 competence protein ComFB -
  HT132_RS03740 (HT132_03740) comFC 706014..706703 (+) 690 WP_202729384.1 phosphoribosyltransferase family protein Machinery gene
  HT132_RS03745 (HT132_03745) - 706777..707196 (+) 420 WP_061861586.1 TIGR03826 family flagellar region protein -
  HT132_RS03750 (HT132_03750) flgM 707266..707532 (+) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  HT132_RS03755 (HT132_03755) - 707547..708029 (+) 483 WP_003151394.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=452753 HT132_RS03720 WP_003219701.1 702538..703227(+) (degU) [Bacillus amyloliquefaciens strain R8-25]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=452753 HT132_RS03720 WP_003219701.1 702538..703227(+) (degU) [Bacillus amyloliquefaciens strain R8-25]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGAGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAATCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTAGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1