Detailed information
Bioinformatically predicted
Overview
| Name | ruvB | Type | Machinery gene |
| Locus tag | I6H57_RS06515 | Genome accession | NZ_CP065991 |
| Coordinates | 1409141..1410148 (-) | Length | 335 a.a. |
| NCBI ID | WP_005696681.1 | Uniprot ID | - |
| Organism | Haemophilus parainfluenzae strain FDAARGOS_1000 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 1404141..1415148
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6H57_RS06485 (I6H57_06485) | ybgC | 1404699..1405127 (-) | 429 | WP_005696676.1 | tol-pal system-associated acyl-CoA thioesterase | - |
| I6H57_RS06490 (I6H57_06490) | ybgE | 1405199..1405486 (-) | 288 | WP_032822627.1 | cyd operon protein YbgE | - |
| I6H57_RS06495 (I6H57_06495) | - | 1405489..1405587 (-) | 99 | WP_100207847.1 | cytochrome bd oxidase small subunit, CydX/CbdX family | - |
| I6H57_RS06500 (I6H57_06500) | cydB | 1405599..1406738 (-) | 1140 | WP_005696678.1 | cytochrome d ubiquinol oxidase subunit II | - |
| I6H57_RS06505 (I6H57_06505) | - | 1406753..1408318 (-) | 1566 | WP_005696679.1 | cytochrome ubiquinol oxidase subunit I | - |
| I6H57_RS06510 (I6H57_06510) | - | 1408774..1409085 (+) | 312 | WP_005696680.1 | DUF5339 domain-containing protein | - |
| I6H57_RS06515 (I6H57_06515) | ruvB | 1409141..1410148 (-) | 1008 | WP_005696681.1 | Holliday junction branch migration DNA helicase RuvB | Machinery gene |
| I6H57_RS06520 (I6H57_06520) | ruvA | 1410162..1410773 (-) | 612 | WP_005696683.1 | Holliday junction branch migration protein RuvA | Machinery gene |
| I6H57_RS06525 (I6H57_06525) | ruvC | 1410832..1411404 (-) | 573 | WP_005696684.1 | crossover junction endodeoxyribonuclease RuvC | - |
| I6H57_RS06530 (I6H57_06530) | - | 1411455..1411889 (-) | 435 | WP_005696685.1 | hypothetical protein | - |
| I6H57_RS06535 (I6H57_06535) | - | 1411907..1412647 (-) | 741 | WP_005696686.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| I6H57_RS06540 (I6H57_06540) | nudB | 1412697..1413155 (-) | 459 | WP_005696687.1 | dihydroneopterin triphosphate diphosphatase | - |
| I6H57_RS06545 (I6H57_06545) | - | 1413257..1414525 (-) | 1269 | WP_005696688.1 | NRAMP family divalent metal transporter | - |
Sequence
Protein
Download Length: 335 a.a. Molecular weight: 37181.60 Da Isoelectric Point: 4.7327
>NTDB_id=452727 I6H57_RS06515 WP_005696681.1 1409141..1410148(-) (ruvB) [Haemophilus parainfluenzae strain FDAARGOS_1000]
MIEADRIISSQVKMDEDVIDRAIRPKLLADYVGQPQVREQMDIFIKAAKLRQDALDHLLIFGPPGLGKTTLANIVANEMG
VNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGA
TTRAGSLTSPLRDRFGIVQRLEFYSVEDLTSIVTRSASCLNLELEDKAAFEVARRSRGTPRIANRLLRRVRDFADVRNDG
IISADIAKQALSMLDVDDAGFDYLDRKLLTAVIERFDGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTPRGRIA
TSLTYRHFGLQKPSE
MIEADRIISSQVKMDEDVIDRAIRPKLLADYVGQPQVREQMDIFIKAAKLRQDALDHLLIFGPPGLGKTTLANIVANEMG
VNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGA
TTRAGSLTSPLRDRFGIVQRLEFYSVEDLTSIVTRSASCLNLELEDKAAFEVARRSRGTPRIANRLLRRVRDFADVRNDG
IISADIAKQALSMLDVDDAGFDYLDRKLLTAVIERFDGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTPRGRIA
TSLTYRHFGLQKPSE
Nucleotide
Download Length: 1008 bp
>NTDB_id=452727 I6H57_RS06515 WP_005696681.1 1409141..1410148(-) (ruvB) [Haemophilus parainfluenzae strain FDAARGOS_1000]
ATGATCGAAGCAGATAGAATTATTAGCAGTCAGGTAAAGATGGATGAAGATGTCATCGATCGTGCGATTCGTCCAAAGCT
TTTAGCTGACTATGTGGGACAGCCACAAGTGCGAGAGCAGATGGATATTTTCATTAAGGCCGCAAAGTTACGTCAAGATG
CCTTAGATCATCTTTTGATCTTTGGTCCTCCAGGATTAGGGAAAACAACGCTTGCTAATATTGTGGCAAATGAAATGGGT
GTAAATATCCGCACCACATCAGGGCCCGTACTTGAAAAAGCTGGCGATTTAGCGGCAATGCTGACAAATCTTGAACCCCA
TGATGTGTTGTTTATTGATGAAATTCACCGCCTTTCTCCAGCGATTGAAGAAGTGCTTTATCCTGCAATGGAAGATTATC
AGCTGGATATTATGATTGGCGAAGGGCCAGCAGCTCGTTCAATTAAATTGGATTTGCCCCCTTTCACATTAATTGGCGCA
ACAACCCGAGCAGGTTCGTTAACCTCGCCATTGCGTGATCGTTTCGGTATTGTTCAACGTTTAGAATTTTATTCCGTTGA
AGATTTAACGTCTATTGTGACAAGAAGTGCCTCTTGCTTAAATCTAGAATTAGAAGATAAAGCCGCTTTTGAAGTCGCTC
GTCGTTCACGTGGTACGCCTCGTATTGCAAACCGTTTATTGCGTCGCGTTCGAGATTTTGCTGATGTGCGTAATGATGGC
ATTATTTCGGCAGACATTGCGAAACAAGCGCTTTCAATGTTAGATGTAGATGATGCGGGCTTTGATTACTTAGATAGAAA
ATTGCTTACCGCTGTAATTGAGCGTTTTGATGGTGGTCCAGTTGGATTAGATAACTTGGCGGCGGCAATAGGTGAAGAAC
GAGACACTATAGAAGATGTATTAGAACCTTACTTGATTCAACAGGGATTTTTACAGCGAACCCCTCGAGGTCGAATTGCG
ACTTCGTTAACTTATCGACACTTCGGACTTCAGAAGCCGTCAGAATAA
ATGATCGAAGCAGATAGAATTATTAGCAGTCAGGTAAAGATGGATGAAGATGTCATCGATCGTGCGATTCGTCCAAAGCT
TTTAGCTGACTATGTGGGACAGCCACAAGTGCGAGAGCAGATGGATATTTTCATTAAGGCCGCAAAGTTACGTCAAGATG
CCTTAGATCATCTTTTGATCTTTGGTCCTCCAGGATTAGGGAAAACAACGCTTGCTAATATTGTGGCAAATGAAATGGGT
GTAAATATCCGCACCACATCAGGGCCCGTACTTGAAAAAGCTGGCGATTTAGCGGCAATGCTGACAAATCTTGAACCCCA
TGATGTGTTGTTTATTGATGAAATTCACCGCCTTTCTCCAGCGATTGAAGAAGTGCTTTATCCTGCAATGGAAGATTATC
AGCTGGATATTATGATTGGCGAAGGGCCAGCAGCTCGTTCAATTAAATTGGATTTGCCCCCTTTCACATTAATTGGCGCA
ACAACCCGAGCAGGTTCGTTAACCTCGCCATTGCGTGATCGTTTCGGTATTGTTCAACGTTTAGAATTTTATTCCGTTGA
AGATTTAACGTCTATTGTGACAAGAAGTGCCTCTTGCTTAAATCTAGAATTAGAAGATAAAGCCGCTTTTGAAGTCGCTC
GTCGTTCACGTGGTACGCCTCGTATTGCAAACCGTTTATTGCGTCGCGTTCGAGATTTTGCTGATGTGCGTAATGATGGC
ATTATTTCGGCAGACATTGCGAAACAAGCGCTTTCAATGTTAGATGTAGATGATGCGGGCTTTGATTACTTAGATAGAAA
ATTGCTTACCGCTGTAATTGAGCGTTTTGATGGTGGTCCAGTTGGATTAGATAACTTGGCGGCGGCAATAGGTGAAGAAC
GAGACACTATAGAAGATGTATTAGAACCTTACTTGATTCAACAGGGATTTTTACAGCGAACCCCTCGAGGTCGAATTGCG
ACTTCGTTAACTTATCGACACTTCGGACTTCAGAAGCCGTCAGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvB | Bacillus subtilis subsp. subtilis str. 168 |
63.222 |
98.209 |
0.621 |
| ruvB | Streptococcus pneumoniae R6 |
58.589 |
97.313 |
0.57 |
| ruvB | Streptococcus pneumoniae D39 |
58.589 |
97.313 |
0.57 |
| ruvB | Streptococcus pneumoniae TIGR4 |
58.589 |
97.313 |
0.57 |
| ruvB | Synechocystis sp. PCC 6803 |
51.796 |
99.701 |
0.516 |
| ruvB | Helicobacter pylori 26695 |
55.921 |
90.746 |
0.507 |