Detailed information NTG0452705

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: HUF19_RS04145
• Genome accession: NZ_CP054475
• Coordinates: 941560..942438 (-)
• Length: 292 a.a.
• NCBI ID: WP_260998627.1
• Uniprot ID: -
• Organism: Thalassolituus hydrocarboniclasticus strain alknpb1M-1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 936560..947438

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HUF19_RS04115 (HUF19_04110)	-	936703..937128 (+)	426	WP_260998622.1	copper chaperone PCu(A)C	-
HUF19_RS04120 (HUF19_04115)	-	937281..938969 (-)	1689	WP_260998623.1	NAD(P)/FAD-dependent oxidoreductase	-
HUF19_RS04125 (HUF19_04120)	-	939120..939656 (+)	537	WP_260998624.1	PadR family transcriptional regulator	-
HUF19_RS04130 (HUF19_04125)	-	939675..940631 (+)	957	WP_260998625.1	DUF808 domain-containing protein	-
HUF19_RS04135 (HUF19_04130)	yacG	940688..940888 (-)	201	WP_145469683.1	DNA gyrase inhibitor YacG	-
HUF19_RS04140 (HUF19_04135)	coaE	940947..941543 (-)	597	WP_260998626.1	dephospho-CoA kinase	-
HUF19_RS04145 (HUF19_04140)	pilD	941560..942438 (-)	879	WP_260998627.1	A24 family peptidase	Machinery gene
HUF19_RS04150 (HUF19_04145)	pilC	942438..943664 (-)	1227	WP_260998628.1	type II secretion system F family protein	Machinery gene
HUF19_RS04155 (HUF19_04150)	pilB	943712..945409 (-)	1698	WP_260998629.1	type IV-A pilus assembly ATPase PilB	Machinery gene
HUF19_RS04160 (HUF19_04155)	-	946058..946183 (-)	126	Protein_818	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
HUF19_RS04165 (HUF19_04160)	-	946394..947038 (-)	645	WP_260998630.1	hypothetical protein	-

Sequence

Protein

• Length: 292 a.a.
• Molecular weight: 32148.50 Da
• Isoelectric Point: 7.6345

>NTDB_id=452705 HUF19_RS04145 WP_260998627.1 941560..942438(-) (pilD) [Thalassolituus hydrocarboniclasticus strain alknpb1M-1]
MKLLQLLADNLVWLAIFIALFSLLIGSFLNVVILRFPVMMFRSWKQDCLEMDSSLPKHPAIDDLSKPFNLLKPDSHCPKC
QVPVKAWQNIPLLSWVLLRGKCAGCGTPIGLRYPAVEIATAILSTALLLVYPWGWQLAAMLVFTWLLISMSVIDIDHQIL
PDTMTLSLLWLGLLVNSQGLFTDLESAVYGAAAGYMALWSVFWIFKLVTGKEGMGYGDFKLLAALGAWLGVQSLPLIILL
SSVVGAMVGIAGIIILGRDKNLPIPFGPYLAAAGWIAALWGNDISQWYLGRF

Nucleotide

• Length: 879 bp

>NTDB_id=452705 HUF19_RS04145 WP_260998627.1 941560..942438(-) (pilD) [Thalassolituus hydrocarboniclasticus strain alknpb1M-1]
ATGAAGCTGCTGCAACTGCTGGCCGACAACCTTGTCTGGCTGGCTATTTTTATCGCGCTGTTCAGCCTGCTGATCGGCAG
TTTCCTCAATGTGGTTATCCTGCGCTTTCCGGTCATGATGTTCCGCAGCTGGAAGCAGGATTGCCTGGAAATGGACAGTA
GCCTGCCAAAGCACCCGGCCATTGACGATCTGAGTAAGCCCTTCAACCTGCTAAAGCCTGACTCACACTGCCCCAAATGT
CAGGTTCCGGTGAAAGCCTGGCAGAATATTCCGCTGCTGAGCTGGGTCTTACTGCGCGGTAAGTGTGCCGGTTGCGGCAC
CCCTATAGGCCTGCGTTATCCGGCGGTTGAGATCGCCACCGCCATCCTCAGTACGGCGTTATTACTGGTGTACCCCTGGG
GTTGGCAGCTGGCAGCTATGCTGGTGTTCACCTGGCTGTTAATCAGCATGTCGGTGATTGATATCGACCATCAGATTCTG
CCCGACACCATGACATTAAGCCTTCTGTGGCTGGGGCTGTTGGTTAACAGTCAGGGATTATTCACCGATCTGGAAAGTGC
GGTATACGGCGCCGCTGCAGGCTATATGGCGCTGTGGAGTGTGTTCTGGATCTTCAAGCTGGTGACTGGCAAAGAGGGAA
TGGGCTACGGCGACTTTAAGCTGCTGGCTGCACTCGGAGCCTGGCTCGGCGTACAAAGTCTGCCGCTGATTATTCTGCTC
TCTTCCGTGGTGGGTGCCATGGTGGGTATTGCCGGCATTATCATTCTCGGACGGGACAAAAACCTTCCGATTCCTTTTGG
CCCCTATCTGGCCGCTGCGGGTTGGATTGCCGCCCTCTGGGGCAATGATATCAGCCAGTGGTATCTGGGCCGTTTCTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (141-250)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-129)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	50.709	96.575	0.49
pilD	Acinetobacter nosocomialis M2	50.709	96.575	0.49
pilD	Vibrio cholerae strain A1552	48.727	94.178	0.459
pilD	Neisseria gonorrhoeae MS11	51.55	88.356	0.455
pilD	Vibrio campbellii strain DS40M4	46.209	94.863	0.438