Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   I6H57_RS01630 Genome accession   NZ_CP065991
Coordinates   341014..341679 (-) Length   221 a.a.
NCBI ID   WP_005695550.1    Uniprot ID   A0ABN0ETK1
Organism   Haemophilus parainfluenzae strain FDAARGOS_1000     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 336014..346679
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H57_RS01610 (I6H57_01610) - 338746..339465 (+) 720 WP_005695547.1 DUF554 domain-containing protein -
  I6H57_RS01615 (I6H57_01615) mutM 339489..340304 (-) 816 WP_005695549.1 DNA-formamidopyrimidine glycosylase -
  I6H57_RS01620 (I6H57_01620) rpmG 340377..340547 (-) 171 WP_005613503.1 50S ribosomal protein L33 -
  I6H57_RS01625 (I6H57_01625) rpmB 340559..340795 (-) 237 WP_005599762.1 50S ribosomal protein L28 -
  I6H57_RS01630 (I6H57_01630) radC 341014..341679 (-) 666 WP_005695550.1 DNA repair protein RadC Machinery gene
  I6H57_RS01635 (I6H57_01635) coaBC 341881..343083 (+) 1203 WP_005695551.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  I6H57_RS01640 (I6H57_01640) dut 343157..343612 (+) 456 WP_005695552.1 dUTP diphosphatase -
  I6H57_RS01645 (I6H57_01645) slmA 343616..344269 (+) 654 WP_005695553.1 nucleoid occlusion factor SlmA -
  I6H57_RS01650 (I6H57_01650) - 344291..344509 (+) 219 WP_005695554.1 YheU family protein -
  I6H57_RS01655 (I6H57_01655) crp 344526..345194 (+) 669 WP_005695555.1 cAMP-activated global transcriptional regulator CRP Regulator

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25204.43 Da        Isoelectric Point: 6.8774

>NTDB_id=452705 I6H57_RS01630 WP_005695550.1 341014..341679(-) (radC) [Haemophilus parainfluenzae strain FDAARGOS_1000]
MQTNTPLMPREKLLKYGVEALEDHELLAIFLRTGIKGCPVMELSHSVLQHFGSLRALLSADKEAFCKVKGLGITQFIQLQ
ATTEMTKRYLKQELLIEHVFSDTSTVKLYLQAELHHEEREIFMVLFLDNQHRLIKKERLFLGTINVTNVYPREIIKESLS
CNAAALILAHNHPSGLAEPSYSDKMITQKIIEAAELMDIRILDHFIVGKGTCYSFAEHNLL

Nucleotide


Download         Length: 666 bp        

>NTDB_id=452705 I6H57_RS01630 WP_005695550.1 341014..341679(-) (radC) [Haemophilus parainfluenzae strain FDAARGOS_1000]
ATGCAAACAAACACTCCTTTAATGCCTCGTGAAAAACTGTTGAAATATGGCGTTGAAGCCCTAGAAGATCACGAATTACT
CGCTATTTTCTTACGTACAGGGATTAAAGGCTGCCCTGTCATGGAATTATCACATAGCGTGCTGCAACATTTTGGCTCCC
TTCGAGCCTTATTAAGTGCAGATAAAGAAGCCTTTTGTAAAGTAAAAGGATTAGGCATTACGCAGTTTATTCAACTGCAA
GCCACCACAGAAATGACAAAGCGTTATCTGAAACAAGAATTGCTGATAGAGCACGTATTTAGCGACACATCCACGGTAAA
ACTTTATCTTCAAGCAGAACTTCACCACGAAGAACGTGAAATTTTTATGGTGTTATTTTTAGATAATCAACATCGTTTGA
TAAAAAAAGAGCGGTTATTTTTAGGCACAATTAATGTGACGAATGTTTATCCACGAGAAATTATTAAAGAAAGCCTTTCC
TGTAATGCGGCCGCTTTAATTTTGGCTCACAACCACCCTTCTGGTCTGGCTGAACCGAGCTATTCCGACAAAATGATCAC
ACAAAAAATTATTGAAGCTGCTGAGTTAATGGATATCCGCATTTTGGACCATTTTATTGTCGGCAAAGGCACTTGTTATT
CTTTTGCAGAACATAATTTGCTATAG

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(9-74)

RadC-like JAB domain (RadC)

(101-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

76.018

100

0.76
  radC Streptococcus pneumoniae TIGR4

38.679

95.928

0.371
  radC Streptococcus pneumoniae R6

38.208

95.928

0.367
  radC Streptococcus pneumoniae D39

38.208

95.928

0.367