Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   I6I15_RS06815 Genome accession   NZ_CP065970
Coordinates   1319008..1320246 (+) Length   412 a.a.
NCBI ID   WP_094250071.1    Uniprot ID   -
Organism   Escherichia coli strain FDAARGOS_1058     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1314008..1325246
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I15_RS06790 (I6I15_06790) mrcA 1314288..1316840 (-) 2553 WP_001300707.1 peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA -
  I6I15_RS06795 (I6I15_06795) hofM 1316960..1317739 (+) 780 WP_001349954.1 DNA utilization protein HofM -
  I6I15_RS06800 (I6I15_06800) hofN 1317739..1318278 (+) 540 WP_001052913.1 DNA utilization protein HofN -
  I6I15_RS06805 (I6I15_06805) hofO 1318262..1318702 (+) 441 WP_001055753.1 DNA utilization protein HofO -
  I6I15_RS06810 (I6I15_06810) hofP 1318692..1319096 (+) 405 WP_001264141.1 DNA utilization protein HofP -
  I6I15_RS06815 (I6I15_06815) comE 1319008..1320246 (+) 1239 WP_094250071.1 DNA uptake porin HofQ Machinery gene
  I6I15_RS06820 (I6I15_06820) aroK 1320647..1321168 (+) 522 WP_000818618.1 shikimate kinase AroK -
  I6I15_RS06825 (I6I15_06825) aroB 1321225..1322313 (+) 1089 WP_000439850.1 3-dehydroquinate synthase -
  I6I15_RS06830 (I6I15_06830) damX 1322405..1323691 (+) 1287 WP_094250070.1 cell division protein DamX -
  I6I15_RS06835 (I6I15_06835) dam 1323798..1324634 (+) 837 WP_000742141.1 adenine-specific DNA-methyltransferase -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 44744.25 Da        Isoelectric Point: 6.1173

>NTDB_id=452548 I6I15_RS06815 WP_094250071.1 1319008..1320246(+) (comE) [Escherichia coli strain FDAARGOS_1058]
MKQWIAALLLMLIPGVQAAKPQKVTLMVDDVPVAQVLQALAEQEKLNLVVSPDVSGTVSLHLTDVPWKQALQTVVKSAGL
ITRQEDNILSVHSIAWQNNNIARQEAEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDN
KTALSALEQWVAQMDLPVGQVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTTLGSDLSVATATTHVGFNIGRIN
GRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKL
HISQNVPGQVLQQADGEVLAIDKQEIEAQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERREL
VVFITPRLVSSE

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=452548 I6I15_RS06815 WP_094250071.1 1319008..1320246(+) (comE) [Escherichia coli strain FDAARGOS_1058]
ATGAAGCAATGGATAGCCGCACTACTGTTGATGCTGATACCCGGCGTACAGGCGGCAAAGCCGCAAAAAGTGACGCTGAT
GGTGGATGACGTTCCGGTAGCTCAGGTGTTGCAGGCGCTGGCTGAACAGGAGAAGTTGAACCTGGTCGTGTCGCCAGACG
TCAGCGGTACGGTGTCGTTACATCTAACAGATGTTCCCTGGAAGCAGGCACTACAAACTGTAGTGAAAAGCGCCGGACTG
ATAACGCGGCAGGAAGACAACATTCTCTCAGTGCATTCCATTGCCTGGCAGAATAACAATATCGCCCGCCAGGAGGCGGA
GCAGGCGCGGGCGCAGGCAAATCTGCCGCTGGAAAATCGCAGTATAACCCTGCAATACGCCGACGCGGGAGAACTGGCGA
AAGCGGGGGAGAAGCTACTGAGTGCCAAAGGGAGTATGACCGTCGATAAACGCACCAATCGCCTTTTGCTACGAGATAAC
AAAACGGCGTTAAGCGCGCTTGAACAGTGGGTAGCGCAAATGGATCTGCCGGTCGGGCAGGTTGAGCTGTCGGCGCATAT
TGTCACCATTAATGAAAAAAGTTTGCGTGAGTTAGGCGTGAAATGGACGCTGGCCGATGCGCAACACGCTGGTGGCGTTG
GGCAAGTCACCACGCTTGGTAGCGACCTCTCCGTAGCGACGGCGACAACGCATGTCGGTTTTAACATTGGGCGCATCAAC
GGACGTTTGCTGGATCTTGAGCTTTCCGCGCTCGAACAAAAACAGCAGCTGGATATTATCGCCAGTCCGCGTCTGCTGGC
CTCACATCTTCAGCCTGCCAGCATTAAACAGGGGAGCGAAATTCCATATCAGGTTTCCAGCGGGGAAAGTGGCGCGACGT
CGGTGGAATTTAAAGAGGCCGTCCTGGGGATGGAGGTCACGCCCACGGTGTTACAAAAAGGTCGCATCCGGCTGAAATTA
CACATCAGCCAGAACGTTCCGGGGCAGGTGCTACAGCAGGCCGATGGCGAAGTGCTGGCGATTGATAAGCAGGAGATCGA
AGCGCAGGTCGAGGTCAAAAGCGGAGAAACGTTGGCGCTGGGCGGCATTTTTACCCGTAAAAATAAATCGGGTCAGGATA
GCGTACCGTTGCTTGGCGACATTCCCTGGTTCGGGCAATTATTTCGTCATGACGGAAAAGAAGATGAACGACGCGAGTTA
GTGGTGTTTATCACGCCACGACTGGTTTCCAGTGAGTAA

Domains

Predicted by InterProScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(120-179)

Bacterial type II and III secretion system protein (Secretin)

(250-409)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Haemophilus influenzae Rd KW20

37.156

100

0.393
  comE Haemophilus influenzae 86-028NP

36.927

100

0.391
  pilQ Vibrio campbellii strain DS40M4

37.53

100

0.383
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

37.046

100

0.371
  pilQ Vibrio cholerae strain A1552

37.046

100

0.371
  comE Glaesserella parasuis strain SC1401

35.714

100

0.364