Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   HSZ47_RS06040 Genome accession   NZ_CP054434
Coordinates   1231757..1234141 (+) Length   794 a.a.
NCBI ID   WP_174538729.1    Uniprot ID   -
Organism   Staphylococcus saprophyticus strain UTI-035     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1226757..1239141
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HSZ47_RS06020 (HSZ47_06020) sal 1227006..1228637 (+) 1632 Protein_1155 Sal family ABC-F type ribosomal protection protein -
  HSZ47_RS06025 (HSZ47_06025) - 1228698..1229840 (+) 1143 WP_064205494.1 cysteine desulfurase family protein -
  HSZ47_RS06030 (HSZ47_06030) mnmA 1229841..1230953 (+) 1113 WP_048787231.1 tRNA 2-thiouridine(34) synthase MnmA -
  HSZ47_RS06035 (HSZ47_06035) - 1231088..1231753 (+) 666 WP_047503944.1 tetratricopeptide repeat protein -
  HSZ47_RS06040 (HSZ47_06040) recD2 1231757..1234141 (+) 2385 WP_174538729.1 ATP-dependent RecD-like DNA helicase Machinery gene
  HSZ47_RS06045 (HSZ47_06045) alaS 1234489..1237119 (+) 2631 WP_011302968.1 alanine--tRNA ligase -
  HSZ47_RS06050 (HSZ47_06050) - 1237189..1237449 (+) 261 WP_002483121.1 IreB family regulatory phosphoprotein -
  HSZ47_RS06055 (HSZ47_06055) ruvX 1237453..1237881 (+) 429 WP_011302969.1 Holliday junction resolvase RuvX -
  HSZ47_RS06060 (HSZ47_06060) - 1237898..1238230 (+) 333 WP_002483123.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 794 a.a.        Molecular weight: 89430.05 Da        Isoelectric Point: 4.5833

>NTDB_id=452459 HSZ47_RS06040 WP_174538729.1 1231757..1234141(+) (recD2) [Staphylococcus saprophyticus strain UTI-035]
MGDPTLFNNSMIKGTVDAILFQNKENFYTVLKVDTIESSETFDSMPTIVGFFPEIAEGDVYTFKGQVVTHPKYGKQLKAE
TFEKELPQTKEAIISYLSSDLFKGIGKKTAQSIVNKLGENAINDILNDPSVLEQVPGLPKKKQKQIAEQIASNQETEQII
IRLHDLGFGPKLAMAIYQAYLGETLNVVENKPYQLVYDVKGIGFNKADTLARNVGIQFNDTERLKAGLLYVLEEECIKQG
HTYLPTQNVLEMTQNMLSQAPSEIIEMQQLNHVLQELVNDTKLIQQENEVAIPSLYYSELKSVQNLYRNYAYTNKLKQIE
QSDLLMKIGEIEERNQVNYANSQKDALQTAINSKIMLLTGGPGTGKTTVIKGIVELYAEIHGLSLNYDDYQNDDYPVVLG
APTGRASKRLAESTGLEAMTIHRLIGWNQDTQPEDILDNEISAKLIIIDEMSMVDTWLFHQFLSAVPIDAQIILVGDEDQ
LPSVGPGQVFKDLIDSKVIPRVNLTEVYRQQDGSSIIELAHRMKLGEPIDITQRFHDRNFINCNTDQIPTVVEKVVSSAV
NKGYDMSDIQVLAPMYKGSAGIKKLNMVLQDILNPKDKDTREIEFGDVFFRKGDKVLQLVNRPNDNIFNGDIGVIVGVFW
AKENALNKDVLVVDFEGNEITFVRQDLIELTHAYCTSIHKSQGSEFPIVIMPMVKQYFRMLQKPILYTGLTRAKQSLVFL
GDPQAFDIGLKTHGQVRMTQLCTFLKAYFNNDASTEEEISDTFDADIILTEDNIFKINPMINMGDISPYDFVED

Nucleotide


Download         Length: 2385 bp        

>NTDB_id=452459 HSZ47_RS06040 WP_174538729.1 1231757..1234141(+) (recD2) [Staphylococcus saprophyticus strain UTI-035]
ATGGGAGACCCTACACTATTTAATAATTCAATGATTAAAGGAACCGTTGATGCGATTTTATTTCAAAATAAAGAAAATTT
TTATACGGTTTTAAAAGTTGATACAATTGAGTCAAGTGAAACATTTGATTCAATGCCTACGATTGTAGGGTTTTTCCCAG
AAATTGCTGAAGGTGATGTTTATACATTCAAAGGCCAAGTTGTTACACATCCAAAGTATGGTAAACAACTTAAAGCTGAA
ACGTTTGAAAAAGAATTACCACAAACTAAAGAGGCAATTATTAGTTATTTATCAAGTGATTTATTTAAAGGTATTGGTAA
AAAAACTGCGCAAAGTATTGTTAATAAACTAGGTGAAAATGCTATAAACGATATCTTGAATGACCCGTCGGTATTAGAGC
AAGTACCTGGTTTACCTAAGAAAAAGCAAAAACAAATTGCTGAACAAATTGCTAGTAATCAAGAGACGGAGCAAATTATC
ATACGCTTACATGATTTAGGGTTTGGACCAAAACTAGCTATGGCGATTTACCAAGCGTATTTAGGAGAAACACTTAATGT
TGTTGAAAATAAACCCTACCAACTCGTATATGATGTAAAAGGAATTGGATTTAATAAAGCTGATACCTTAGCACGTAATG
TTGGAATCCAGTTCAATGATACAGAAAGACTAAAAGCGGGTTTGTTATATGTACTTGAAGAAGAATGTATTAAGCAAGGA
CATACATATTTACCTACTCAAAATGTATTAGAAATGACTCAAAATATGCTTTCTCAAGCACCTAGTGAAATAATAGAAAT
GCAACAATTGAATCATGTATTACAAGAATTGGTAAATGATACCAAACTCATTCAACAAGAAAATGAAGTTGCAATTCCGA
GTTTATATTATTCAGAATTAAAAAGTGTGCAGAATCTTTATCGCAATTATGCGTATACGAATAAACTCAAACAAATAGAA
CAGTCTGATCTTTTAATGAAGATTGGAGAAATTGAAGAGCGCAATCAAGTTAATTATGCAAATTCACAAAAAGATGCGTT
ACAGACTGCTATTAATTCTAAAATTATGCTGCTCACAGGTGGCCCTGGTACAGGTAAAACAACTGTGATAAAAGGTATTG
TAGAATTATATGCAGAAATTCATGGTCTCTCATTAAATTATGATGATTATCAAAATGATGATTATCCAGTCGTATTAGGT
GCGCCTACAGGAAGAGCTTCAAAGCGTTTGGCAGAGTCGACAGGTTTAGAAGCCATGACAATTCATCGCTTAATCGGATG
GAATCAGGATACACAACCGGAAGATATTTTAGATAATGAAATATCAGCAAAATTAATTATCATTGATGAGATGTCTATGG
TTGATACTTGGCTGTTTCACCAATTTTTAAGTGCAGTTCCAATAGATGCACAAATCATTTTAGTAGGTGATGAAGATCAA
TTGCCTTCTGTAGGTCCTGGTCAAGTATTTAAAGATTTAATTGATTCAAAAGTGATACCTCGTGTTAATTTAACAGAAGT
TTATAGACAACAAGATGGTTCTAGTATTATTGAATTAGCGCATCGGATGAAACTAGGTGAACCGATTGATATAACCCAAC
GTTTTCATGATCGAAATTTTATAAATTGTAATACAGATCAGATTCCGACAGTTGTGGAAAAAGTTGTTTCAAGCGCTGTG
AATAAAGGCTATGATATGAGTGACATTCAAGTGCTTGCACCAATGTATAAAGGGTCAGCAGGCATTAAAAAACTTAATAT
GGTATTACAAGATATTTTAAATCCTAAGGATAAAGATACACGTGAAATAGAATTTGGTGATGTGTTTTTTAGAAAAGGTG
ACAAAGTCTTGCAACTTGTAAATAGGCCTAATGATAATATTTTCAACGGTGATATTGGTGTAATCGTGGGTGTTTTTTGG
GCAAAAGAAAATGCGTTGAACAAAGATGTATTAGTCGTTGATTTTGAAGGTAATGAAATTACTTTTGTTCGTCAAGATTT
AATAGAATTAACTCATGCTTATTGTACGTCGATCCATAAATCACAAGGTTCTGAATTCCCAATAGTCATCATGCCTATGG
TAAAACAATACTTTAGAATGCTACAAAAGCCCATATTATATACTGGCTTAACAAGGGCTAAACAATCCCTTGTCTTTTTA
GGTGATCCGCAAGCCTTTGATATTGGTTTAAAAACGCATGGACAAGTGAGAATGACACAGTTATGCACATTTTTAAAAGC
CTACTTTAATAACGATGCATCTACTGAAGAAGAAATCAGCGACACATTTGATGCTGATATCATTCTAACTGAAGACAATA
TTTTTAAAATTAACCCAATGATTAATATGGGAGATATTTCCCCATATGACTTCGTTGAAGATTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(153-243)

AAA domain (AAA_30)

(339-545)

Helix-hairpin-helix domain (HHH_5)

(103-149)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(672-719)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(585-655)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

51.134

100

0.511