Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HTY51_RS17295 Genome accession   NZ_CP054424
Coordinates   3571400..3571888 (+) Length   162 a.a.
NCBI ID   WP_174253889.1    Uniprot ID   A0A6N0BWB6
Organism   Rhodoferax sp. BAB1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3566400..3576888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HTY51_RS17280 (HTY51_17280) - 3566440..3567012 (+) 573 WP_254606923.1 RcnB family protein -
  HTY51_RS17285 (HTY51_17285) uvrA 3567026..3569929 (-) 2904 WP_174253887.1 excinuclease ABC subunit UvrA -
  HTY51_RS17290 (HTY51_17290) - 3570200..3571372 (+) 1173 WP_174253888.1 MFS transporter -
  HTY51_RS17295 (HTY51_17295) ssb 3571400..3571888 (+) 489 WP_174253889.1 single-stranded DNA-binding protein Machinery gene
  HTY51_RS17300 (HTY51_17300) - 3571972..3573417 (-) 1446 WP_174253890.1 aldehyde dehydrogenase family protein -
  HTY51_RS17305 (HTY51_17305) - 3573419..3574336 (-) 918 WP_174253891.1 dihydrodipicolinate synthase family protein -
  HTY51_RS17310 (HTY51_17310) - 3574342..3575514 (-) 1173 WP_174253892.1 L-rhamnonate dehydratase -
  HTY51_RS17315 (HTY51_17315) - 3575525..3576541 (-) 1017 WP_174253893.1 4-hydroxythreonine-4-phosphate dehydrogenase PdxA -

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 17472.47 Da        Isoelectric Point: 5.9596

>NTDB_id=452441 HTY51_RS17295 WP_174253889.1 3571400..3571888(+) (ssb) [Rhodoferax sp. BAB1]
MASVNKVILVGNCGRDPEIRYLPSGQAVANVSVATSSRRKDKNSGEMIEDTQWHRVTFYDRLAEIAGEYLKKGRPVYVEG
RIKYGKFTNKDGVEQNTCDIIATEMQLLGGREGSGGPDEDGGGAPRRSAPPASRPAPSAAPRQQAPAKSASGFEDMDDDI
PF

Nucleotide


Download         Length: 489 bp        

>NTDB_id=452441 HTY51_RS17295 WP_174253889.1 3571400..3571888(+) (ssb) [Rhodoferax sp. BAB1]
ATGGCATCCGTCAACAAAGTCATCCTGGTCGGCAACTGCGGCCGCGACCCCGAAATCCGTTACCTGCCCTCGGGCCAGGC
CGTGGCCAACGTCAGCGTGGCCACCTCCAGCCGCCGCAAGGACAAGAACTCGGGCGAGATGATCGAGGACACCCAGTGGC
ACCGTGTCACCTTCTATGACCGCCTGGCCGAGATCGCCGGCGAATACCTGAAGAAAGGCCGCCCGGTTTACGTCGAAGGC
CGCATCAAATACGGCAAGTTCACCAACAAGGATGGTGTTGAGCAGAACACCTGCGACATCATCGCCACCGAAATGCAGCT
GCTCGGCGGCCGTGAAGGCTCGGGCGGTCCGGACGAAGACGGTGGTGGCGCCCCGCGTCGCAGCGCTCCCCCGGCCTCGC
GCCCGGCTCCCAGCGCCGCTCCGCGCCAGCAGGCCCCGGCCAAATCGGCCAGCGGCTTCGAGGACATGGACGACGACATT
CCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6N0BWB6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria meningitidis MC58

53.714

100

0.58
  ssb Neisseria gonorrhoeae MS11

52.571

100

0.568
  ssb Vibrio cholerae strain A1552

44.382

100

0.488
  ssb Glaesserella parasuis strain SC1401

41.304

100

0.469