Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   HTY60_RS20575 Genome accession   NZ_CP054415
Coordinates   3989824..3990342 (-) Length   172 a.a.
NCBI ID   WP_013354263.1    Uniprot ID   A0A9P1JL20
Organism   Bacillus amyloliquefaciens strain 205     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 3989824..3999557 3989824..3990342 within 0


Gene organization within MGE regions


Location: 3989824..3999557
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HTY60_RS20575 (HTY60_20575) ssbA 3989824..3990342 (-) 519 WP_013354263.1 single-stranded DNA-binding protein SsbA Machinery gene
  HTY60_RS20580 (HTY60_20580) rpsF 3990382..3990669 (-) 288 WP_013354264.1 30S ribosomal protein S6 -
  HTY60_RS20585 (HTY60_20585) ychF 3990781..3991881 (-) 1101 WP_013354265.1 redox-regulated ATPase YchF -
  HTY60_RS20590 (HTY60_20590) - 3992008..3994011 (-) 2004 WP_174202054.1 molybdopterin-dependent oxidoreductase -
  HTY60_RS20595 (HTY60_20595) - 3994058..3994264 (-) 207 WP_004392973.1 DUF951 domain-containing protein -
  HTY60_RS20600 (HTY60_20600) - 3994350..3995354 (-) 1005 WP_041481692.1 membrane protein -
  HTY60_RS20605 (HTY60_20605) - 3995528..3995938 (+) 411 WP_013354268.1 GNAT family N-acetyltransferase -
  HTY60_RS20610 (HTY60_20610) yyaC 3996158..3996772 (+) 615 WP_013354269.1 spore protease YyaC -
  HTY60_RS20615 (HTY60_20615) - 3996802..3997653 (-) 852 WP_013354270.1 ParB/RepB/Spo0J family partition protein -
  HTY60_RS20620 (HTY60_20620) soj 3997646..3998407 (-) 762 WP_004392964.1 sporulation initiation inhibitor protein Soj -
  HTY60_RS20625 (HTY60_20625) noc 3998706..3999557 (-) 852 WP_007615083.1 nucleoid occlusion protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18717.29 Da        Isoelectric Point: 4.7621

>NTDB_id=452348 HTY60_RS20575 WP_013354263.1 3989824..3990342(-) (ssbA) [Bacillus amyloliquefaciens strain 205]
MLNRVVLVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQSGEREADFINCVTWRKQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNSGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=452348 HTY60_RS20575 WP_013354263.1 3989824..3990342(-) (ssbA) [Bacillus amyloliquefaciens strain 205]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTAACAAAAGACCCAGAGCTTCGTTATACGCCAAGCGGTGCGGCTGTCGC
CACGTTTACTCTAGCTGTGAATCGTACATTCACGAACCAGTCTGGAGAACGTGAAGCCGATTTCATTAATTGTGTCACTT
GGAGAAAACAAGCCGAAAACGTTGCAAACTTTCTTAAAAAAGGAAGCCTTGCCGGCGTAGACGGCCGTCTTCAGACAAGA
AATTATGAAAATCAGCAGGGACAGCGTGTCTTCGTGACAGAAGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAAAA
CAGCGGCGGTTCTGGTTCAGGCGGATACAACGAAGGAAACAGCGGCGGAGGCCAATACTTTGGCGGAGGCCAAAATGATA
ATCCGTTCGGCGGAAATCAGAACAACCAGAGAAGAAATCAAGGGAACAGCTTTAATGATGATCCATTTGCCAACGACGGC
AAGCCGATTGACATCTCGGATGATGATCTTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

98.256

100

0.983
  ssb Latilactobacillus sakei subsp. sakei 23K

59.322

100

0.61
  ssbB Bacillus subtilis subsp. subtilis str. 168

65.094

61.628

0.401
  ssb Glaesserella parasuis strain SC1401

34.973

100

0.372