Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JBL36_RS06045 Genome accession   NZ_CP065947
Coordinates   1298772..1299269 (-) Length   165 a.a.
NCBI ID   WP_003114685.1    Uniprot ID   A0A0H2ZGD4
Organism   Pseudomonas aeruginosa strain PAS6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1293772..1304269
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JBL36_RS06025 (JBL36_06025) pchD 1294556..1296199 (+) 1644 WP_031671267.1 pyochelin biosynthesis salicyl-AMP ligase PchD -
  JBL36_RS06030 (JBL36_06030) pchC 1296196..1296951 (+) 756 WP_003114687.1 pyochelin biosynthesis editing thioesterase PchC -
  JBL36_RS06035 (JBL36_06035) pchB 1296951..1297256 (+) 306 WP_003106950.1 isochorismate lyase PchB -
  JBL36_RS06040 (JBL36_06040) pchA 1297253..1298683 (+) 1431 WP_016263059.1 isochorismate synthase PchA -
  JBL36_RS06045 (JBL36_06045) ssb 1298772..1299269 (-) 498 WP_003114685.1 single-stranded DNA-binding protein Machinery gene
  JBL36_RS06050 (JBL36_06050) - 1299286..1300674 (-) 1389 WP_003103910.1 MFS transporter -
  JBL36_RS06055 (JBL36_06055) uvrA 1300888..1303725 (+) 2838 WP_003093663.1 excinuclease ABC subunit UvrA Machinery gene
  JBL36_RS06060 (JBL36_06060) bfr 1303797..1304261 (-) 465 WP_003093668.1 bacterioferritin -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18557.46 Da        Isoelectric Point: 5.2781

>NTDB_id=452228 JBL36_RS06045 WP_003114685.1 1298772..1299269(-) (ssb) [Pseudomonas aeruginosa strain PAS6]
MARGVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGNMQLLGGRPSGDDSQRAPREPMQRPQQAPQQQSRPAPQQQPAPQPAQDYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=452228 JBL36_RS06045 WP_003114685.1 1298772..1299269(-) (ssb) [Pseudomonas aeruginosa strain PAS6]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCAACGGCAA
TGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAACAGGAGCGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAA
GGCAGCCTGCGCACCCGCAAGTGGCAGGGCCAGGACGGTCAGGATCGCTACACCACCGAGATCGTGGTCGACATCAACGG
CAACATGCAGTTGCTCGGCGGCCGCCCCTCCGGCGACGATTCGCAGCGCGCCCCGCGCGAGCCCATGCAGCGCCCGCAGC
AGGCCCCGCAGCAGCAGTCGCGTCCGGCCCCGCAGCAGCAACCGGCGCCGCAACCGGCCCAGGACTACGACAGCTTCGAC
GACGACATTCCGTTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZGD4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.636
  ssb Glaesserella parasuis strain SC1401

52.486

100

0.576
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.521
  ssb Neisseria meningitidis MC58

47.486

100

0.515