NTDB

Overview

Name	ysxA/radC	Type	Machinery gene
Locus tag	JAV55_RS14415	Genome accession	NZ_CP065943
Coordinates	2794688..2795362 (-)	Length	224 a.a.
NCBI ID	WP_003184045.1	Uniprot ID	Q65GL3
Organism	Bacillus licheniformis strain H2
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2789688..2800362

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JAV55_RS14380 (JAV55_14380)	-	2789796..2790227 (+)	432	WP_369878943.1	SRPBCC domain-containing protein	-
JAV55_RS14385 (JAV55_14385)	-	2790227..2790547 (+)	321	WP_003184034.1	helix-turn-helix transcriptional regulator	-
JAV55_RS14390 (JAV55_14390)	minD	2790592..2791398 (-)	807	WP_003184035.1	septum site-determining protein MinD	-
JAV55_RS14395 (JAV55_14395)	minC	2791401..2792081 (-)	681	WP_011198163.1	septum site-determining protein MinC	-
JAV55_RS14400 (JAV55_14400)	mreD	2792136..2792654 (-)	519	WP_003184039.1	rod shape-determining protein MreD	-
JAV55_RS14405 (JAV55_14405)	mreC	2792651..2793559 (-)	909	WP_003184040.1	rod shape-determining protein MreC	-
JAV55_RS14410 (JAV55_14410)	-	2793590..2794600 (-)	1011	WP_003184042.1	rod shape-determining protein	-
JAV55_RS14415 (JAV55_14415)	ysxA/radC	2794688..2795362 (-)	675	WP_003184045.1	DNA repair protein RadC	Machinery gene
JAV55_RS14420 (JAV55_14420)	-	2795417..2795989 (-)	573	WP_003184048.1	nucleoside triphosphate pyrophosphatase	-
JAV55_RS14425 (JAV55_14425)	-	2796143..2797174 (-)	1032	WP_003184050.1	SPOR domain-containing protein	-
JAV55_RS14430 (JAV55_14430)	comC	2797378..2798127 (-)	750	WP_003184052.1	A24 family peptidase	Machinery gene
JAV55_RS14435 (JAV55_14435)	-	2798270..2799568 (-)	1299	WP_009329287.1	folylpolyglutamate synthase/dihydrofolate synthase family protein	-

Sequence

Protein

Download Length: 224 a.a. Molecular weight: 25239.11 Da Isoelectric Point: 8.3107

                                >NTDB_id=452174 JAV55_RS14415 WP_003184045.1 2794688..2795362(-) (ysxA/radC) [Bacillus licheniformis strain H2]

MKLKDFPDEERPRERLLNTGAESLSNHELLAILLRTGTKKESVLQLSSRLLQTFDGLRLLKEASAEELSSISGIGRAKAV

QILAALELGRRIHSLACKDRYVIRFPEDAANFLMGDMRFLSQEHFVCVYLNTKNQVIHKRTVFIGSLNSSIVHPREVFKE

ALKRSAASFICVHNHPSGDPAPSREDIEVTQRLHESGQLLGIELLDHIIIGDQKFVSLKEKGYL

Nucleotide

Download Length: 675 bp

                                >NTDB_id=452174 JAV55_RS14415 WP_003184045.1 2794688..2795362(-) (ysxA/radC) [Bacillus licheniformis strain H2]

TTGAAATTAAAAGATTTTCCTGATGAAGAAAGGCCAAGGGAGCGCCTTCTCAACACAGGCGCCGAAAGTTTGTCAAACCA

TGAACTGCTTGCGATACTGCTCAGAACCGGTACGAAAAAAGAATCGGTTCTTCAGCTTTCAAGCCGGCTGCTTCAAACGT

TTGACGGCCTCCGTTTGTTAAAAGAAGCATCCGCCGAGGAGCTTTCAAGCATTTCCGGGATCGGCCGCGCAAAAGCCGTG

CAGATTTTGGCGGCCCTTGAGCTTGGCCGGCGCATTCACAGTCTGGCTTGCAAAGACCGTTATGTGATTCGTTTTCCCGA

AGATGCGGCCAATTTTTTAATGGGGGATATGCGCTTTCTCTCTCAGGAGCACTTCGTATGTGTGTATCTGAACACGAAAA

ACCAGGTGATCCACAAGCGCACGGTTTTTATAGGGAGCCTGAACTCTTCAATCGTCCATCCGAGGGAAGTGTTTAAAGAA

GCTTTAAAGCGCTCCGCAGCTTCATTCATCTGCGTCCACAATCATCCGTCCGGAGATCCGGCTCCAAGCCGCGAAGACAT

AGAAGTTACACAGCGCCTTCACGAGTCCGGACAGCTGCTCGGAATCGAATTGCTCGATCATATCATCATCGGTGATCAAA

AATTTGTGAGCTTAAAAGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(4-80)

RadC-like JAB domain (RadC)

(104-222)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	Q65GL3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ysxA/radC	Bacillus subtilis subsp. subtilis str. 168	80.804	100	0.808
radC	Streptococcus pneumoniae TIGR4	46.667	93.75	0.438
radC	Streptococcus pneumoniae R6	46.19	93.75	0.433
radC	Streptococcus pneumoniae D39	46.19	93.75	0.433
radC	Streptococcus gordonii str. Challis substr. CH1	44.762	93.75	0.42

Detailed information NTG0452174