Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HPE41_RS00965 Genome accession   NZ_CP054371
Coordinates   204312..204848 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain SCU-316     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 182032..214109 204312..204848 within 0


Gene organization within MGE regions


Location: 182032..214109
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPE41_RS00865 (HPE41_00865) ubiC 182638..183135 (+) 498 WP_001308201.1 chorismate lyase -
  HPE41_RS00870 (HPE41_00870) ubiA 183148..184020 (+) 873 WP_000455227.1 4-hydroxybenzoate octaprenyltransferase -
  HPE41_RS00875 (HPE41_00875) plsB 184175..186598 (-) 2424 WP_000017354.1 glycerol-3-phosphate 1-O-acyltransferase PlsB -
  HPE41_RS00880 (HPE41_00880) dgkA 186769..187137 (+) 369 WP_000002907.1 diacylglycerol kinase -
  HPE41_RS00885 (HPE41_00885) lexA 187247..187855 (+) 609 WP_000646078.1 transcriptional repressor LexA -
  HPE41_RS00890 (HPE41_00890) dinF 187928..189253 (+) 1326 WP_023154505.1 MATE family efflux transporter DinF -
  HPE41_RS00895 (HPE41_00895) yjbJ 189369..189578 (+) 210 WP_001030594.1 CsbD family protein -
  HPE41_RS00900 (HPE41_00900) zur 189620..190135 (-) 516 WP_001295691.1 zinc uptake transcriptional repressor Zur -
  HPE41_RS23910 - 190454..190738 (+) 285 WP_001313498.1 hypothetical protein -
  HPE41_RS00905 (HPE41_00905) - 190729..191475 (+) 747 WP_001313499.1 DUF2713 family protein -
  HPE41_RS00910 (HPE41_00910) dusA 191838..192875 (+) 1038 WP_001313500.1 tRNA dihydrouridine(20/20a) synthase DusA -
  HPE41_RS00915 (HPE41_00915) pspG 193009..193251 (+) 243 WP_000891404.1 envelope stress response protein PspG -
  HPE41_RS00920 (HPE41_00920) qorA 193417..194400 (-) 984 WP_000235509.1 quinone oxidoreductase -
  HPE41_RS00925 (HPE41_00925) dnaB 194483..195898 (+) 1416 WP_000918363.1 replicative DNA helicase -
  HPE41_RS00930 (HPE41_00930) alr 195951..197030 (+) 1080 WP_001147337.1 alanine racemase -
  HPE41_RS00935 (HPE41_00935) tyrB 197283..198476 (+) 1194 WP_000486960.1 aromatic amino acid transaminase -
  HPE41_RS23650 - 198978..199182 (-) 205 Protein_179 hypothetical protein -
  HPE41_RS00945 (HPE41_00945) aphA 199600..200313 (+) 714 WP_001226920.1 acid phosphatase AphA -
  HPE41_RS00950 (HPE41_00950) yjbQ 200424..200840 (+) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  HPE41_RS00955 (HPE41_00955) yjbR 200844..201200 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  HPE41_RS00960 (HPE41_00960) uvrA 201235..204057 (-) 2823 WP_001033156.1 excinuclease ABC subunit UvrA -
  HPE41_RS00965 (HPE41_00965) ssb 204312..204848 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  HPE41_RS00970 (HPE41_00970) - 205050..205526 (-) 477 WP_001121509.1 hypothetical protein -
  HPE41_RS00975 (HPE41_00975) yjcB 205797..206078 (-) 282 WP_001362074.1 YjcB family protein -
  HPE41_RS00980 (HPE41_00980) pdeC 206507..208093 (+) 1587 WP_000019517.1 c-di-GMP phosphodiesterase PdeC -
  HPE41_RS00985 (HPE41_00985) soxS 208096..208419 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  HPE41_RS00990 (HPE41_00990) soxR 208505..208969 (+) 465 WP_000412435.1 redox-sensitive transcriptional activator SoxR -
  HPE41_RS00995 (HPE41_00995) ghxP 209515..210864 (+) 1350 WP_000106882.1 guanine/hypoxanthine transporter GhxP -
  HPE41_RS01000 (HPE41_01000) yjcE 211015..212664 (+) 1650 WP_000402207.1 Na+/H+ antiporter -
  HPE41_RS01005 (HPE41_01005) espX5 212818..214109 (-) 1292 Protein_192 T3SS effector pentapeptide repeat protein EspX5 -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=452077 HPE41_RS00965 WP_000168305.1 204312..204848(+) (ssb) [Escherichia coli strain SCU-316]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=452077 HPE41_RS00965 WP_000168305.1 204312..204848(+) (ssb) [Escherichia coli strain SCU-316]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCTGGTCAGGATCGCTACACCACAGAAGTTGTGGTGAACGTTGG
CGGCACTATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489