Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HPE48_RS12915 Genome accession   NZ_CP054368
Coordinates   2639876..2640412 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain SCU-115     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2634876..2645412
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPE48_RS12895 (HPE48_12880) soxR 2636605..2637069 (-) 465 WP_000412431.1 redox-sensitive transcriptional activator SoxR -
  HPE48_RS12900 (HPE48_12885) soxS 2637155..2637478 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  HPE48_RS12905 (HPE48_12890) pdeC 2637481..2639067 (-) 1587 WP_174143948.1 c-di-GMP phosphodiesterase PdeC -
  HPE48_RS12910 (HPE48_12895) yjcB 2639496..2639777 (+) 282 WP_001296643.1 YjcB family protein -
  HPE48_RS12915 (HPE48_12900) ssb 2639876..2640412 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  HPE48_RS12920 (HPE48_12905) uvrA 2640667..2643489 (+) 2823 WP_000357763.1 excinuclease ABC subunit UvrA -
  HPE48_RS12925 (HPE48_12910) yjbR 2643524..2643880 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  HPE48_RS12930 (HPE48_12915) yjbQ 2643884..2644300 (-) 417 WP_000270369.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  HPE48_RS12935 (HPE48_12920) aphA 2644411..2645124 (-) 714 WP_001226933.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=452059 HPE48_RS12915 WP_000168305.1 2639876..2640412(-) (ssb) [Escherichia coli strain SCU-115]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=452059 HPE48_RS12915 WP_000168305.1 2639876..2640412(-) (ssb) [Escherichia coli strain SCU-115]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCCACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTAGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTATACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489