Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   JAN99_RS02715 Genome accession   NZ_CP065927
Coordinates   534604..535269 (+) Length   221 a.a.
NCBI ID   WP_136115988.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain emm9ST603     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 529604..540269
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JAN99_RS02690 (JAN99_02685) - 529755..531155 (+) 1401 WP_023079249.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  JAN99_RS02695 (JAN99_02690) - 531155..531532 (+) 378 WP_002991882.1 S1 RNA-binding domain-containing protein -
  JAN99_RS02700 (JAN99_02695) cysK 531550..532491 (-) 942 WP_010922535.1 cysteine synthase A -
  JAN99_RS02705 (JAN99_02700) - 532619..533251 (-) 633 WP_009880468.1 YigZ family protein -
  JAN99_RS02710 (JAN99_02705) comFA/cflA 533307..534632 (+) 1326 WP_110002775.1 DEAD/DEAH box helicase Machinery gene
  JAN99_RS02715 (JAN99_02710) comFC/cflB 534604..535269 (+) 666 WP_136115988.1 ComF family protein Machinery gene
  JAN99_RS02720 (JAN99_02715) raiA 535349..535897 (+) 549 WP_002988974.1 ribosome-associated translation inhibitor RaiA -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25164.35 Da        Isoelectric Point: 9.2088

>NTDB_id=452020 JAN99_RS02715 WP_136115988.1 534604..535269(+) (comFC/cflB) [Streptococcus pyogenes strain emm9ST603]
MICLLCQQISQTPISITEIIFLRRISSPICQQCQKSFQKIGESVCATCCANSDIIACRDCLKWENKGYNVNHRSLYCYNA
AMKAYFSQYKFQGDYLLRKVFAVELADVITKYYKGYIPVPVPVSPGCFRERQFNQVSAILEAANVSYLSLFEKLDNTHQS
SRTKKERLLVEKSYRLLKVSNIPDKILIVDDIYTTGSTIIALRKQLAKVANSDIKSLSIAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=452020 JAN99_RS02715 WP_136115988.1 534604..535269(+) (comFC/cflB) [Streptococcus pyogenes strain emm9ST603]
ATGATCTGTCTACTATGTCAACAAATTAGTCAAACACCAATAAGTATTACAGAAATCATCTTTTTAAGGCGTATCTCTTC
ACCGATTTGTCAACAATGTCAAAAAAGCTTTCAAAAGATAGGAGAAAGTGTTTGTGCGACATGTTGTGCAAACTCAGATA
TAATAGCTTGTCGAGATTGTCTAAAATGGGAAAACAAAGGATACAATGTAAATCATAGAAGCTTATATTGTTATAATGCT
GCTATGAAAGCATACTTCAGTCAATATAAGTTTCAAGGAGACTATTTATTAAGAAAAGTTTTTGCAGTAGAACTTGCCGA
TGTTATCACCAAGTACTATAAAGGCTATATCCCAGTCCCGGTTCCTGTAAGTCCCGGTTGTTTTCGAGAAAGACAATTTA
ATCAAGTGAGCGCTATTCTTGAGGCAGCTAATGTTAGCTACCTTTCTCTTTTTGAAAAGCTAGATAATACTCACCAATCT
TCCAGAACAAAAAAAGAGAGATTATTAGTAGAAAAATCTTATCGACTACTAAAAGTATCAAACATTCCTGATAAAATCCT
TATAGTAGATGATATTTATACTACTGGTAGTACAATTATCGCTCTTAGAAAACAATTGGCTAAAGTAGCAAATAGTGACA
TTAAAAGTTTGTCAATTGCACGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae Rx1

42.081

100

0.421
  comFC/cflB Streptococcus pneumoniae D39

42.081

100

0.421
  comFC/cflB Streptococcus pneumoniae R6

42.081

100

0.421
  comFC/cflB Streptococcus pneumoniae TIGR4

42.081

100

0.421
  comFC/cflB Streptococcus mitis SK321

42.081

100

0.421
  comFC/cflB Streptococcus mitis NCTC 12261

41.629

100

0.416