Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | HPE50_RS01810 | Genome accession | NZ_CP054353 |
| Coordinates | 389977..390513 (+) | Length | 178 a.a. |
| NCBI ID | WP_000168305.1 | Uniprot ID | A0A9P2PPK2 |
| Organism | Escherichia coli strain SCU-172 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 376134..402794 | 389977..390513 | within | 0 |
Gene organization within MGE regions
Location: 376134..402794
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPE50_RS01750 (HPE50_01750) | - | 376134..377138 (+) | 1005 | WP_001572188.1 | DUF2713 family protein | - |
| HPE50_RS01755 (HPE50_01755) | dusA | 377500..378537 (+) | 1038 | WP_001298868.1 | tRNA dihydrouridine(20/20a) synthase DusA | - |
| HPE50_RS01760 (HPE50_01760) | pspG | 378671..378913 (+) | 243 | WP_000891407.1 | envelope stress response protein PspG | - |
| HPE50_RS01765 (HPE50_01765) | qorA | 379079..380062 (-) | 984 | WP_000235517.1 | quinone oxidoreductase | - |
| HPE50_RS01770 (HPE50_01770) | dnaB | 380145..381560 (+) | 1416 | WP_000918363.1 | replicative DNA helicase | - |
| HPE50_RS01775 (HPE50_01775) | alr | 381613..382692 (+) | 1080 | WP_001147328.1 | alanine racemase | - |
| HPE50_RS01780 (HPE50_01780) | tyrB | 382945..384138 (+) | 1194 | WP_000487002.1 | aromatic amino acid transaminase | - |
| HPE50_RS27235 | - | 384642..384864 (-) | 223 | Protein_332 | hypothetical protein | - |
| HPE50_RS01790 (HPE50_01790) | aphA | 385265..385978 (+) | 714 | WP_001226928.1 | acid phosphatase AphA | - |
| HPE50_RS01795 (HPE50_01795) | yjbQ | 386089..386505 (+) | 417 | WP_000270375.1 | secondary thiamine-phosphate synthase enzyme YjbQ | - |
| HPE50_RS01800 (HPE50_01800) | yjbR | 386509..386865 (+) | 357 | WP_000155657.1 | MmcQ/YjbR family DNA-binding protein | - |
| HPE50_RS01805 (HPE50_01805) | uvrA | 386900..389722 (-) | 2823 | WP_000357740.1 | excinuclease ABC subunit UvrA | - |
| HPE50_RS01810 (HPE50_01810) | ssb | 389977..390513 (+) | 537 | WP_000168305.1 | single-stranded DNA-binding protein SSB1 | Machinery gene |
| HPE50_RS01815 (HPE50_01815) | - | 390672..391919 (+) | 1248 | WP_000414651.1 | site-specific integrase | - |
| HPE50_RS01820 (HPE50_01820) | - | 391906..393444 (+) | 1539 | WP_001333349.1 | site-specific integrase | - |
| HPE50_RS01825 (HPE50_01825) | - | 393461..395494 (+) | 2034 | WP_001572191.1 | hypothetical protein | - |
| HPE50_RS01830 | - | 395487..395906 (+) | 420 | WP_001062122.1 | hypothetical protein | - |
| HPE50_RS01835 (HPE50_01835) | avs4 | 395982..400745 (+) | 4764 | WP_001572194.1 | AVAST type 4 anti-phage nuclease Avs4 | - |
| HPE50_RS01840 (HPE50_01840) | - | 401284..402105 (-) | 822 | WP_001272932.1 | abortive infection system antitoxin AbiGi family protein | - |
| HPE50_RS01845 (HPE50_01845) | yjcB | 402513..402794 (-) | 282 | WP_001295689.1 | YjcB family protein | - |
Sequence
Protein
Download Length: 178 a.a. Molecular weight: 18975.00 Da Isoelectric Point: 5.2358
>NTDB_id=452011 HPE50_RS01810 WP_000168305.1 389977..390513(+) (ssb) [Escherichia coli strain SCU-172]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF
Nucleotide
Download Length: 537 bp
>NTDB_id=452011 HPE50_RS01810 WP_000168305.1 389977..390513(+) (ssb) [Escherichia coli strain SCU-172]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGACAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTAGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GTGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTAG
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGACAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTAGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GTGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
74.444 |
100 |
0.753 |
| ssb | Glaesserella parasuis strain SC1401 |
57.923 |
100 |
0.596 |
| ssb | Neisseria meningitidis MC58 |
48.066 |
100 |
0.489 |
| ssb | Neisseria gonorrhoeae MS11 |
48.066 |
100 |
0.489 |