Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   MS14413_RS09870 Genome accession   NZ_CP054302
Coordinates   2081410..2082540 (-) Length   376 a.a.
NCBI ID   WP_031945334.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain MS14413     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2076410..2087540
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MS14413_RS09845 (MS14413_01993) - 2076585..2077349 (-) 765 WP_000786954.1 AraC family transcriptional regulator -
  MS14413_RS09850 (MS14413_01994) - 2077371..2078585 (-) 1215 WP_000372841.1 MFS transporter -
  MS14413_RS09855 (MS14413_01995) - 2078722..2079372 (+) 651 WP_086225940.1 TetR/AcrR family transcriptional regulator -
  MS14413_RS09860 (MS14413_01996) - 2079478..2080398 (+) 921 WP_000084546.1 DMT family transporter -
  MS14413_RS09865 (MS14413_01997) - 2080790..2081359 (-) 570 WP_000633612.1 L-threonylcarbamoyladenylate synthase -
  MS14413_RS09870 (MS14413_01998) dprA 2081410..2082540 (-) 1131 WP_031945334.1 DNA-processing protein DprA Machinery gene
  MS14413_RS09875 (MS14413_01999) tsaP 2082561..2083715 (-) 1155 WP_020752706.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  MS14413_RS09880 (MS14413_02000) def 2083838..2084368 (+) 531 WP_001196539.1 peptide deformylase -
  MS14413_RS09885 (MS14413_02001) - 2084405..2084833 (+) 429 WP_000231986.1 DUF2946 family protein -
  MS14413_RS09890 (MS14413_02002) - 2084905..2087019 (+) 2115 WP_077109064.1 TonB-dependent copper receptor -
  MS14413_RS09895 (MS14413_02003) - 2087073..2087279 (+) 207 WP_000182542.1 hypothetical protein -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 41770.30 Da        Isoelectric Point: 6.7195

>NTDB_id=451917 MS14413_RS09870 WP_031945334.1 2081410..2082540(-) (dprA) [Acinetobacter baumannii strain MS14413]
MLTQLSSHHYHTLKVWYLVQHSLVSFKKIIDYFGNCEKATQPDGLAKWSSLGLHANHLKRVNEFQTPQGQAQFEQLVQQV
RQHTDFILTAGDSGYPSQLLPYTDYPPIIFGKGQAQALLQPQIAIVGSRKPSPHGRQVAYDFAYYLSEKGFFISSGLAYG
IDEAAHQGASTHQRTIAVTGTGLDTTYPAQNKKLAGHILAQNGAIITEFLPGTPPLQQHFPRRNRIVSGLSLGVLVVEAT
LKSGSLITANKAAEQGKTVFAIPGHIYSEFHQGCHQLIREGAILIDHPEQIIEDLALPTQWQSQQQNQTEEANTNTPEIP
EHLIDLYQSLDWVGQNIDQLVVHHNIPVSELTSSLMELELLGLCMQQSGLYLRCRS

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=451917 MS14413_RS09870 WP_031945334.1 2081410..2082540(-) (dprA) [Acinetobacter baumannii strain MS14413]
ATGCTCACTCAACTTTCTTCACACCACTACCACACACTTAAAGTGTGGTATTTGGTGCAGCACTCTTTAGTTAGCTTTAA
AAAAATTATTGATTATTTTGGAAATTGTGAAAAAGCCACTCAACCTGATGGTTTAGCAAAGTGGTCCTCTCTGGGGCTAC
ATGCTAATCACTTAAAGCGTGTAAACGAATTTCAAACGCCCCAAGGTCAGGCGCAGTTTGAACAACTTGTACAACAAGTT
CGTCAGCATACGGATTTTATTTTAACGGCAGGTGACTCAGGCTACCCCTCTCAATTACTTCCTTATACAGATTATCCACC
TATTATTTTTGGGAAAGGTCAAGCGCAAGCTTTATTGCAACCTCAGATTGCGATTGTCGGTAGCCGAAAACCAAGCCCAC
ATGGACGACAGGTCGCTTATGATTTTGCTTACTACTTAAGTGAAAAGGGCTTTTTCATTAGTAGTGGTCTGGCTTATGGC
ATTGATGAAGCCGCACATCAAGGTGCATCTACTCATCAACGTACCATTGCAGTGACGGGTACGGGCTTAGACACTACTTA
TCCAGCTCAAAATAAAAAACTTGCAGGACATATTTTGGCTCAAAACGGCGCCATTATTACTGAGTTTTTACCGGGTACAC
CGCCATTACAACAGCATTTTCCACGTAGAAACCGAATTGTCAGCGGTTTGAGTTTAGGCGTTTTGGTGGTAGAAGCGACA
TTAAAAAGTGGCTCACTCATCACGGCCAATAAAGCTGCTGAACAAGGTAAAACCGTATTCGCGATTCCGGGCCATATTTA
TAGCGAGTTTCATCAAGGATGCCATCAACTTATCCGTGAAGGTGCAATTTTAATCGACCATCCTGAACAGATTATTGAGG
ATCTTGCTTTACCAACCCAATGGCAAAGTCAGCAACAAAATCAAACTGAAGAAGCTAATACGAATACTCCAGAAATTCCT
GAGCATTTGATTGACCTTTATCAGTCTTTAGACTGGGTGGGACAAAATATTGACCAACTTGTAGTTCACCATAATATTCC
AGTTTCTGAACTGACCTCTTCACTAATGGAACTAGAACTACTCGGTTTATGTATGCAACAATCAGGGCTGTATTTACGTT
GTCGTTCTTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(87-285)

DprA winged helix domain (DprA_WH)

(328-369)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii strain A118

97.872

100

0.979
  dprA Acinetobacter baumannii D1279779

97.606

100

0.976
  dprA Acinetobacter baylyi ADP1

70.341

100

0.713
  dprA Vibrio cholerae strain A1552

42.598

88.032

0.375