Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HRV96_RS23845 Genome accession   NZ_CP054270
Coordinates   5043838..5044365 (-) Length   175 a.a.
NCBI ID   WP_004856483.1    Uniprot ID   A0AAP1MZU7
Organism   Raoultella ornithinolytica strain OHMEATKPC2_NDM5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5038838..5049365
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HRV96_RS23835 (HRV96_23765) - 5039252..5041513 (-) 2262 WP_032718545.1 TonB-dependent siderophore receptor -
  HRV96_RS23840 (HRV96_23770) - 5042190..5043740 (+) 1551 WP_015585363.1 lytic transglycosylase F -
  HRV96_RS23845 (HRV96_23775) ssb 5043838..5044365 (-) 528 WP_004856483.1 single-stranded DNA-binding protein SSB1 Machinery gene
  HRV96_RS23850 (HRV96_23780) uvrA 5044612..5047437 (+) 2826 WP_004856481.1 excinuclease ABC subunit UvrA -
  HRV96_RS23855 (HRV96_23785) - 5047438..5047794 (-) 357 WP_004856479.1 MmcQ/YjbR family DNA-binding protein -
  HRV96_RS23860 (HRV96_23790) - 5047798..5048214 (-) 417 WP_004856477.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  HRV96_RS23865 (HRV96_23795) aphA 5048360..5049073 (-) 714 WP_004856476.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 18790.84 Da        Isoelectric Point: 5.2456

>NTDB_id=451757 HRV96_RS23845 WP_004856483.1 5043838..5044365(-) (ssb) [Raoultella ornithinolytica strain OHMEATKPC2_NDM5]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQEKYTTEIVVNVGGTMQMLGGRQQGAGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQAPAA
PSNEPPMDFDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=451757 HRV96_RS23845 WP_004856483.1 5043838..5044365(-) (ssb) [Raoultella ornithinolytica strain OHMEATKPC2_NDM5]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCGGAAGTGGCCGGCGAGTATCTGCGTAAAGGTTCTCAGGTCTATATT
GAAGGCCAACTGCGTACCCGTAAATGGACTGACCAATCTGGTCAGGAAAAATACACCACCGAGATCGTGGTTAACGTTGG
CGGCACGATGCAAATGCTCGGCGGTCGTCAGCAGGGCGCAGGCGCTCCGGCAGGCGGCGGTCAGCAGCAGGGCGGTTGGG
GTCAGCCTCAGCAGCCGCAGGGCGGCAACCAGTTTAGCGGCGGCGCACAGTCTCGTCCGCAGCAGCAGGCACCGGCAGCA
CCTTCTAACGAACCCCCGATGGATTTCGATGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.766
  ssb Glaesserella parasuis strain SC1401

58.378

100

0.617
  ssb Neisseria meningitidis MC58

48.603

100

0.497
  ssb Neisseria gonorrhoeae MS11

48.603

100

0.497