Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   BAMTA208_RS09715 Genome accession   NC_017188
Coordinates   1979211..1979807 (-) Length   198 a.a.
NCBI ID   WP_013352088.1    Uniprot ID   A0A9P1JH25
Organism   Bacillus amyloliquefaciens TA208     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1974211..1984807
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAMTA208_RS09690 (BAMTA208_10000) mobB 1974585..1975106 (-) 522 WP_014471749.1 molybdopterin-guanine dinucleotide biosynthesis protein B -
  BAMTA208_RS09695 (BAMTA208_10005) glp 1975067..1976359 (-) 1293 WP_013352092.1 gephyrin-like molybdotransferase Glp -
  BAMTA208_RS09700 (BAMTA208_10010) - 1976377..1977396 (-) 1020 WP_013352091.1 molybdopterin-synthase adenylyltransferase MoeB -
  BAMTA208_RS09705 (BAMTA208_10015) - 1977449..1978051 (-) 603 WP_013352090.1 molybdenum cofactor guanylyltransferase -
  BAMTA208_RS09710 (BAMTA208_10020) - 1978198..1979190 (+) 993 WP_013352089.1 hypothetical protein -
  BAMTA208_RS09715 (BAMTA208_10025) rok 1979211..1979807 (-) 597 WP_013352088.1 transcriptional regulator Rok Regulator
  BAMTA208_RS09720 (BAMTA208_10030) - 1980272..1980730 (-) 459 WP_014470457.1 TlpA family protein disulfide reductase -
  BAMTA208_RS09725 (BAMTA208_10035) - 1980745..1980948 (-) 204 Protein_1930 peroxiredoxin -
  BAMTA208_RS09730 (BAMTA208_10040) - 1981182..1981988 (+) 807 WP_013352085.1 mechanosensitive ion channel family protein -
  BAMTA208_RS09735 (BAMTA208_10045) - 1982022..1982267 (-) 246 WP_013352084.1 YkuS family protein -
  BAMTA208_RS09740 (BAMTA208_10050) - 1982328..1983452 (-) 1125 WP_013352083.1 N-acetyldiaminopimelate deacetylase -
  BAMTA208_RS09745 (BAMTA208_10055) dapD 1983523..1984233 (-) 711 WP_013352082.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  BAMTA208_RS09750 (BAMTA208_10060) - 1984315..1984770 (-) 456 WP_013352081.1 flavodoxin -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22539.60 Da        Isoelectric Point: 9.6909

>NTDB_id=45168 BAMTA208_RS09715 WP_013352088.1 1979211..1979807(-) (rok) [Bacillus amyloliquefaciens TA208]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNTGSLSDTKKEFRPEKKSDSLPVLAELAAQEMRSYQKPQ
TQPQSTQPQMQSITTLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETAETGNDTAAE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=45168 BAMTA208_RS09715 WP_013352088.1 1979211..1979807(-) (rok) [Bacillus amyloliquefaciens TA208]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTGAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATACGGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAGTGACTCTCTCCCAGTGCTTGCAGAGCTTGCAGCACAGGAAATGAGAAGCTACCAAAAGCCGCAG
ACACAGCCTCAATCCACCCAGCCGCAAATGCAGTCTATTACGACTCTTCCAGCCGGCATTCCAGACGGTTCTACTAGAAG
AAGAAGAGGGACGGCAAGACCGGGTTCAAAGGCGGCAAAACTGCGCGAAGCAGCCATTAAAACATTGAAACGCCACAATG
CAGCAATCAAAAGTTCAGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACCTTTATG
CAAAGCTTAATTAAAATGTATCCTGAAGTGAAAAAACCATACCGCGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGA
AACAGCAGAAACGGGAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

85.052

97.98

0.833

Multiple sequence alignment