Detailed information NTG0045168

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: SDSE_RS10935
• Genome accession: NC_019042
• Coordinates: 52147..53145 (+)
• Length: 332 a.a.
• NCBI ID: WP_015057190.1
• Uniprot ID: -
• Organism: Streptococcus dysgalactiae subsp. equisimilis AC-2713
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 47147..58145

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SDSE_RS10915 (S_dysgal_equisimilis_AC2713_108)	-	48075..49331 (+)	1257	WP_015057188.1	DUF4041 domain-containing protein	-
SDSE_RS10920	-	49324..49533 (+)	210	WP_014611912.1	hypothetical protein	-
SDSE_RS10925 (S_dysgal_equisimilis_AC2713_109)	purB	49582..50874 (+)	1293	WP_003056595.1	adenylosuccinate lyase	-
SDSE_RS10930 (S_dysgal_equisimilis_AC2713_110)	comR	51017..51928 (+)	912	WP_003060893.1	XRE family transcriptional regulator	Regulator
SDSE_RS10935 (S_dysgal_equisimilis_AC2713_112)	ruvB	52147..53145 (+)	999	WP_015057190.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
SDSE_RS10940 (S_dysgal_equisimilis_AC2713_113)	-	53280..53711 (+)	432	WP_003059365.1	low molecular weight protein-tyrosine-phosphatase	-
SDSE_RS10945 (S_dysgal_equisimilis_AC2713_114)	-	53740..54141 (+)	402	WP_003049089.1	MORN repeat-containing protein	-
SDSE_RS10950 (S_dysgal_equisimilis_AC2713_115)	-	54138..55913 (+)	1776	WP_003059359.1	acyltransferase family protein	-

Sequence

Protein

• Length: 332 a.a.
• Molecular weight: 37274.73 Da
• Isoelectric Point: 4.5556

>NTDB_id=45168 SDSE_RS10935 WP_015057190.1 52147..53145(+) (ruvB) [Streptococcus dysgalactiae subsp. equisimilis AC-2713]
MARILDNDVMGDEELVERTLRPQYLREYIGQDKVKEQLTIFIEAAKLRDESLDHVLLFGPPGLGKTTMAFVIANELGVNL
KQTSGPAIEKAGDLVAILNDLEPGDVLFIDEIHRLPMAVEEVLYSAMEDFYIDIMIGAGDTSRSVHLDLPPFTLIGATTR
AGMLSNPLRARFGITGHMEYYQEADLTEIVERTADIFDMEIVHEAAQELACRSRGTPRIANRLLKRVRDYAQIVGDGVIT
AQITDKALTMLDVDREGLDYVDQKILRTMIEMYQGGPVGLGTLSVNIAEERDTVEDMYEPYLIQKGFLMRTRTGRVATEK
AYRHLGYPYPSK

Nucleotide

• Length: 999 bp

>NTDB_id=45168 SDSE_RS10935 WP_015057190.1 52147..53145(+) (ruvB) [Streptococcus dysgalactiae subsp. equisimilis AC-2713]
ATGGCTAGAATTTTAGATAATGATGTAATGGGGGATGAAGAACTTGTTGAGCGAACGCTTCGTCCGCAGTATTTACGTGA
GTACATTGGGCAAGATAAGGTTAAGGAACAATTAACCATTTTTATTGAAGCGGCTAAGCTCCGTGATGAATCTTTAGATC
ATGTGTTGTTGTTTGGCCCTCCAGGTTTAGGGAAAACCACAATGGCATTTGTGATTGCTAATGAATTAGGGGTTAACTTG
AAGCAAACTTCAGGACCAGCGATTGAGAAGGCTGGTGATTTGGTAGCTATTTTGAATGATCTGGAACCAGGAGATGTGCT
CTTTATTGATGAAATTCATCGTCTGCCTATGGCAGTCGAAGAAGTATTGTACAGTGCTATGGAAGATTTTTACATCGACA
TTATGATTGGTGCTGGGGACACTAGTCGAAGTGTTCATTTGGATTTGCCACCTTTTACATTGATTGGAGCTACAACACGA
GCTGGGATGTTATCAAATCCTTTGCGAGCTCGATTTGGCATTACTGGACACATGGAGTATTATCAGGAAGCTGATTTGAC
TGAAATTGTCGAACGAACAGCCGATATTTTTGACATGGAAATTGTTCACGAAGCGGCTCAAGAGTTAGCTTGCCGTAGTC
GGGGAACACCGCGTATTGCTAATAGATTGTTAAAGCGGGTACGTGATTATGCTCAGATTGTTGGAGATGGCGTCATCACG
GCTCAGATTACAGACAAAGCCCTAACCATGCTTGATGTTGATCGAGAAGGTCTTGATTATGTAGATCAGAAGATTTTACG
CACCATGATTGAAATGTATCAGGGTGGACCTGTTGGGTTAGGCACTTTATCAGTTAATATTGCAGAAGAACGTGATACAG
TTGAAGACATGTACGAACCTTATCTGATTCAAAAAGGATTTCTAATGCGTACACGAACTGGTCGTGTGGCGACGGAAAAA
GCCTATCGTCATCTTGGTTATCCATATCCGTCTAAGTAA

Domains

Predicted by InterProScan.

• RuvB C-terminal winged helix domain (WHD_RuvB) (256-325)

• RuvB AAA lid domain (AAA_lid_4) (181-254)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (20-178)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Streptococcus pneumoniae TIGR4	89.759	100	0.898
ruvB	Streptococcus pneumoniae R6	89.458	100	0.895
ruvB	Streptococcus pneumoniae D39	89.458	100	0.895
ruvB	Bacillus subtilis subsp. subtilis str. 168	60.061	98.795	0.593
ruvB	Helicobacter pylori 26695	50.613	98.193	0.497
ruvB	Synechocystis sp. PCC 6803	50	95.783	0.479