NTDB

Overview

Name	ysxA/radC	Type	Machinery gene
Locus tag	I1A60_RS08420	Genome accession	NZ_CP065857
Coordinates	1735173..1735859 (-)	Length	228 a.a.
NCBI ID	WP_000692886.1	Uniprot ID	-
Organism	Staphylococcus aureus strain CC1153-MRSA
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1730173..1740859

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I1A60_RS08375 (I1A60_08375)	rpmA	1730887..1731171 (-)	285	WP_000916187.1	50S ribosomal protein L27	-
I1A60_RS08380 (I1A60_08380)	-	1731183..1731503 (-)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
I1A60_RS08385 (I1A60_08385)	rplU	1731509..1731817 (-)	309	WP_000457386.1	50S ribosomal protein L21	-
I1A60_RS08390 (I1A60_08390)	mreD	1732110..1732640 (-)	531	WP_001259925.1	rod shape-determining protein MreD	-
I1A60_RS08395 (I1A60_08395)	mreC	1732640..1733482 (-)	843	WP_000911041.1	rod shape-determining protein MreC	-
I1A60_RS08400 (I1A60_08400)	-	1733681..1733800 (-)	120	WP_000840602.1	hypothetical protein	-
I1A60_RS08405 (I1A60_08405)	-	1733874..1734347 (-)	474	WP_001236734.1	DUF4930 family protein	-
I1A60_RS08410 (I1A60_08410)	-	1734507..1734704 (+)	198	WP_000025835.1	hypothetical protein	-
I1A60_RS08415 (I1A60_08415)	-	1734821..1735105 (-)	285	WP_000171859.1	hypothetical protein	-
I1A60_RS08420 (I1A60_08420)	ysxA/radC	1735173..1735859 (-)	687	WP_000692886.1	RadC family protein	Machinery gene
I1A60_RS08425 (I1A60_08425)	-	1735856..1736563 (-)	708	WP_072468108.1	prepilin peptidase	-
I1A60_RS08430 (I1A60_08430)	-	1736825..1738096 (-)	1272	WP_072468107.1	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	-
I1A60_RS08435 (I1A60_08435)	-	1738109..1740739 (-)	2631	WP_072468106.1	valine--tRNA ligase	-

Sequence

Protein

Download Length: 228 a.a. Molecular weight: 25311.24 Da Isoelectric Point: 6.7572

                                >NTDB_id=451653 I1A60_RS08420 WP_000692886.1 1735173..1735859(-) (ysxA/radC) [Staphylococcus aureus strain CC1153-MRSA]

MKIKEMVTSEMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLIQVKGIGLQKAI

TLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILLLNSKNVVIKETCVFKGTLNSSIVHPREIFSI

AVRENANAIIAVHNHPSGDVTPSQEDIITTMRLKECGLILGIDLLDHIIIGDNRFTSLVEAGYFDEND

Nucleotide

Download Length: 687 bp

                                >NTDB_id=451653 I1A60_RS08420 WP_000692886.1 1735173..1735859(-) (ysxA/radC) [Staphylococcus aureus strain CC1153-MRSA]

TTGAAAATTAAAGAAATGGTAACTTCAGAAATGCCAAGAGAACGTTTGTTAAGCCATGGTGCAAAAAGTCTTTCGAATAC

AGAATTATTAGCTATATTAATTAACACCGGAAGAAAAGGATTCTCGAGCATAGACATTAGTAATGAACTGCTTAAATCTG

CTTCGAATCTGAATGAATTGAAAAAATCTTCAATTAACGATTTGATACAAGTTAAAGGGATTGGATTACAAAAAGCAATT

ACTTTAAAAGCAGCATTTGAGTTAGGGGAAAGGATGGGGAGAAGAGCTGAAAATAATCGTATAAAAATAACGCAACCAAG

TGATGTTGCTGATTATATGATTCCAACAATGAAAGATTTAACACAAGAACATTTTGTCATTTTATTGTTAAATTCAAAAA

ATGTAGTGATTAAAGAAACCTGTGTTTTTAAAGGTACATTAAATAGTTCGATTGTACATCCACGTGAAATTTTTAGTATT

GCGGTGAGAGAAAATGCCAATGCAATCATCGCAGTTCATAATCATCCATCCGGTGATGTAACGCCCTCACAAGAAGATAT

CATAACAACAATGAGGTTGAAGGAGTGTGGTTTGATTTTAGGGATAGATTTATTGGATCATATTATAATCGGTGATAATA

GATTTACCAGTCTTGTTGAAGCGGGTTACTTTGATGAAAATGATTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-222)

UPF0758 N-terminal (UPF0758_N)

(3-80)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ysxA/radC	Bacillus subtilis subsp. subtilis str. 168	52.679	98.246	0.518
radC	Streptococcus pneumoniae TIGR4	41.038	92.982	0.382
radC	Streptococcus gordonii str. Challis substr. CH1	39.908	95.614	0.382
radC	Streptococcus pneumoniae R6	40.566	92.982	0.377
radC	Streptococcus pneumoniae D39	40.566	92.982	0.377

Detailed information NTG0451653