Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HR071_RS14990 Genome accession   NZ_CP054232
Coordinates   3120462..3120998 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain EcPF7     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3115462..3125998
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HR071_RS14970 (HR071_14965) aphA 3115750..3116463 (+) 714 WP_001226933.1 acid phosphatase AphA -
  HR071_RS14975 (HR071_14970) yjbQ 3116574..3116990 (+) 417 WP_000270369.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  HR071_RS14980 (HR071_14975) yjbR 3116994..3117350 (+) 357 WP_000153726.1 MmcQ/YjbR family DNA-binding protein -
  HR071_RS14985 (HR071_14980) uvrA 3117385..3120207 (-) 2823 WP_000357755.1 excinuclease ABC subunit UvrA -
  HR071_RS14990 (HR071_14985) ssb 3120462..3120998 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  HR071_RS14995 (HR071_14990) yjcB 3121097..3121378 (-) 282 WP_001296643.1 YjcB family protein -
  HR071_RS15000 (HR071_14995) pdeC 3121807..3123393 (+) 1587 WP_001296644.1 c-di-GMP phosphodiesterase PdeC -
  HR071_RS15005 (HR071_15000) soxS 3123396..3123719 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  HR071_RS15010 (HR071_15005) soxR 3123805..3124272 (+) 468 WP_176316568.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=451604 HR071_RS14990 WP_000168305.1 3120462..3120998(+) (ssb) [Escherichia coli strain EcPF7]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=451604 HR071_RS14990 WP_000168305.1 3120462..3120998(+) (ssb) [Escherichia coli strain EcPF7]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCCACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTAGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTATACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489