Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HR073_RS00930 Genome accession   NZ_CP054227
Coordinates   203089..203625 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain EcPF15     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 179670..212926 203089..203625 within 0
IS/Tn 203798..204256 203089..203625 flank 173


Gene organization within MGE regions


Location: 179670..212926
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HR073_RS00825 (HR073_00825) - 179670..181250 (+) 1581 WP_000900533.1 SopA family protein -
  HR073_RS00830 (HR073_00830) ubiC 181473..181970 (+) 498 WP_001305723.1 chorismate lyase -
  HR073_RS00835 (HR073_00835) ubiA 181983..182855 (+) 873 WP_000455227.1 4-hydroxybenzoate octaprenyltransferase -
  HR073_RS00840 (HR073_00840) plsB 183010..185433 (-) 2424 WP_000017354.1 glycerol-3-phosphate 1-O-acyltransferase PlsB -
  HR073_RS00845 (HR073_00845) dgkA 185604..185972 (+) 369 WP_000002913.1 diacylglycerol kinase -
  HR073_RS00850 (HR073_00850) lexA 186082..186690 (+) 609 WP_000646078.1 transcriptional repressor LexA -
  HR073_RS00855 (HR073_00855) dinF 186763..188088 (+) 1326 WP_001545103.1 MATE family efflux transporter DinF -
  HR073_RS00860 (HR073_00860) yjbJ 188204..188413 (+) 210 WP_001030593.1 CsbD family protein -
  HR073_RS00865 (HR073_00865) zur 188455..188970 (-) 516 WP_001295691.1 zinc uptake transcriptional repressor Zur -
  HR073_RS00870 (HR073_00870) - 189288..190250 (+) 963 WP_000912582.1 DUF2713 family protein -
  HR073_RS00875 (HR073_00875) dusA 190613..191650 (+) 1038 WP_001298868.1 tRNA dihydrouridine(20/20a) synthase DusA -
  HR073_RS00880 (HR073_00880) pspG 191784..192026 (+) 243 WP_000891411.1 envelope stress response protein PspG -
  HR073_RS00885 (HR073_00885) qorA 192192..193175 (-) 984 WP_000235525.1 quinone oxidoreductase -
  HR073_RS00890 (HR073_00890) dnaB 193258..194673 (+) 1416 WP_000918364.1 replicative DNA helicase -
  HR073_RS00895 (HR073_00895) alr 194726..195805 (+) 1080 WP_001147321.1 alanine racemase -
  HR073_RS00900 (HR073_00900) tyrB 196058..197251 (+) 1194 WP_000486940.1 aromatic amino acid transaminase -
  HR073_RS00905 (HR073_00905) - 197614..197976 (-) 363 Protein_168 hypothetical protein -
  HR073_RS00910 (HR073_00910) aphA 198377..199090 (+) 714 WP_001226928.1 acid phosphatase AphA -
  HR073_RS00915 (HR073_00915) yjbQ 199201..199617 (+) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  HR073_RS00920 (HR073_00920) yjbR 199621..199977 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  HR073_RS00925 (HR073_00925) uvrA 200012..202834 (-) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  HR073_RS00930 (HR073_00930) ssb 203089..203625 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  HR073_RS00935 (HR073_00935) tnpA 203798..204256 (-) 459 WP_000526135.1 IS200/IS605-like element IS200C family transposase -
  HR073_RS00940 (HR073_00940) yjcB 204435..204716 (-) 282 WP_001295689.1 YjcB family protein -
  HR073_RS00945 (HR073_00945) pdeC 205145..206728 (+) 1584 WP_000019571.1 c-di-GMP phosphodiesterase PdeC -
  HR073_RS00950 (HR073_00950) soxS 206734..207057 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  HR073_RS00955 (HR073_00955) soxR 207143..207607 (+) 465 WP_000412424.1 redox-sensitive transcriptional activator SoxR -
  HR073_RS00960 (HR073_00960) ghxP 208331..209680 (+) 1350 WP_000106882.1 guanine/hypoxanthine transporter GhxP -
  HR073_RS00965 (HR073_00965) yjcE 209831..211480 (+) 1650 WP_000402207.1 Na+/H+ antiporter -
  HR073_RS00970 (HR073_00970) espX5 211634..212926 (-) 1293 WP_001545106.1 T3SS effector pentapeptide repeat protein EspX5 -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=451542 HR073_RS00930 WP_000168305.1 203089..203625(+) (ssb) [Escherichia coli strain EcPF15]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=451542 HR073_RS00930 WP_000168305.1 203089..203625(+) (ssb) [Escherichia coli strain EcPF15]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCTGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCTGGTCAGGATCGCTACACCACAGAAGTTGTGGTGAACGTTGG
CGGCACCATGCAGATGTTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGCGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCTGCT
CCGGCAGCACCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489