Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HRH33_RS24000 Genome accession   NZ_CP054205
Coordinates   5303277..5303792 (-) Length   171 a.a.
NCBI ID   WP_017849542.1    Uniprot ID   A0A6I3WGC1
Organism   Pseudomonas rhodesiae strain NL2019     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5298277..5308792
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HRH33_RS23975 (HRH33_23975) - 5298702..5299457 (-) 756 WP_034100986.1 alpha/beta fold hydrolase -
  HRH33_RS23980 (HRH33_23980) - 5299447..5300556 (-) 1110 WP_167418227.1 DUF3182 family protein -
  HRH33_RS23985 (HRH33_23985) - 5300728..5301699 (-) 972 WP_167418228.1 GlxA family transcriptional regulator -
  HRH33_RS23990 (HRH33_23990) - 5301796..5302359 (+) 564 WP_167418229.1 cysteine hydrolase family protein -
  HRH33_RS23995 (HRH33_23995) tam 5302381..5303142 (-) 762 WP_167418230.1 trans-aconitate 2-methyltransferase -
  HRH33_RS24000 (HRH33_24000) ssb 5303277..5303792 (-) 516 WP_017849542.1 single-stranded DNA-binding protein Machinery gene
  HRH33_RS24005 (HRH33_24005) - 5303802..5305196 (-) 1395 WP_034100992.1 MFS transporter -
  HRH33_RS24010 (HRH33_24010) uvrA 5305375..5308209 (+) 2835 WP_173603565.1 excinuclease ABC subunit UvrA -
  HRH33_RS24015 (HRH33_24015) bfr 5308276..5308740 (-) 465 WP_003176400.1 bacterioferritin -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18989.15 Da        Isoelectric Point: 5.9455

>NTDB_id=451439 HRH33_RS24000 WP_017849542.1 5303277..5303792(-) (ssb) [Pseudomonas rhodesiae strain NL2019]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDQQGQGGMSNSAPRPQQSRPQPSQQPQRESRPAPQQAAPQPAA
DFDSFDDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=451439 HRH33_RS24000 WP_017849542.1 5303277..5303792(-) (ssb) [Pseudomonas rhodesiae strain NL2019]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
TGCCGTGACCAACCTGAGTCTGGCGACCAGCGAACAGTGGACCGACAAGCAGACCGGCCAGAAGGTCGAGAAGACCGAAT
GGCACCGCGTGTCGATGTTCGGCAAGGTCGCGGAAATCGCCGGCGAATACCTGCGCAAAGGTTCGCAGGTCTACATCGAA
GGCAAATTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGTTACACCACTGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTGGGCGGCCGTCCACAGGGCGACCAACAGGGCCAGGGCGGCATGTCCAACTCGGCACCGCGTCCACAGC
AGTCGCGCCCACAGCCAAGCCAGCAGCCACAGCGTGAGTCGCGTCCAGCGCCACAGCAGGCGGCACCTCAGCCGGCGGCG
GATTTCGACAGCTTTGATGACGATATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6I3WGC1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.286

100

0.596
  ssb Neisseria gonorrhoeae MS11

48.315

100

0.503
  ssb Glaesserella parasuis strain SC1401

44.792

100

0.503
  ssb Neisseria meningitidis MC58

46.591

100

0.48