Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HQ939_RS05655 Genome accession   NZ_CP054198
Coordinates   1119757..1120275 (+) Length   172 a.a.
NCBI ID   WP_021110692.1    Uniprot ID   -
Organism   Glaesserella parasuis strain YHP170504     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1114757..1125275
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HQ939_RS05645 (HQ939_05655) - 1116162..1116542 (-) 381 WP_010786782.1 YacL family protein -
  HQ939_RS05650 (HQ939_05660) uvrA 1116626..1119454 (-) 2829 WP_075606454.1 excinuclease ABC subunit UvrA -
  HQ939_RS05655 (HQ939_05665) ssb 1119757..1120275 (+) 519 WP_021110692.1 single-stranded DNA-binding protein Machinery gene
  HQ939_RS05660 (HQ939_05670) - 1120428..1121915 (-) 1488 WP_062923800.1 helicase HerA-like C-terminal domain-containing protein -
  HQ939_RS05665 (HQ939_05675) rhlB 1121925..1123145 (-) 1221 WP_075606453.1 ATP-dependent RNA helicase RhlB -
  HQ939_RS05670 (HQ939_05680) - 1123209..1123481 (-) 273 WP_005712616.1 HigA family addiction module antitoxin -
  HQ939_RS05675 (HQ939_05685) - 1123492..1123770 (-) 279 WP_005712614.1 type II toxin-antitoxin system RelE/ParE family toxin -
  HQ939_RS05680 (HQ939_05690) argF 1123919..1124929 (+) 1011 WP_075606452.1 ornithine carbamoyltransferase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19260.17 Da        Isoelectric Point: 5.0006

>NTDB_id=451402 HQ939_RS05655 WP_021110692.1 1119757..1120275(+) (ssb) [Glaesserella parasuis strain YHP170504]
MAGVNKVIIVGNLGNAPDMRTMPNGDAVATLSVATSESWNDKMTGERREVTEWHRIVFFRRQAEVAGQYLRKGSKVYVEG
KLKTRKWQDQNGQDRYTTEIQGDVLQMLDSRSGDQGGGWNQTLTNYNQDGYTDSYDQNNNVNGGNATRPRPTPKPAAQAE
PPMDNFDDDIPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=451402 HQ939_RS05655 WP_021110692.1 1119757..1120275(+) (ssb) [Glaesserella parasuis strain YHP170504]
ATGGCAGGTGTAAATAAAGTAATTATTGTCGGCAATCTCGGTAACGCCCCTGATATGCGTACAATGCCAAACGGCGATGC
GGTTGCAACATTAAGTGTAGCAACCAGTGAAAGTTGGAACGATAAAATGACAGGCGAACGCCGTGAAGTCACTGAATGGC
ACCGTATCGTTTTCTTCCGCCGTCAAGCAGAAGTCGCAGGACAATACTTACGCAAAGGCTCAAAAGTCTATGTAGAAGGC
AAACTCAAAACACGCAAATGGCAAGATCAAAACGGTCAAGATCGTTACACCACAGAAATTCAAGGCGATGTGCTACAAAT
GTTAGACAGTCGTAGCGGTGATCAAGGTGGTGGCTGGAACCAAACACTAACCAACTACAATCAAGACGGCTACACCGACA
GCTATGATCAAAATAACAACGTCAACGGAGGCAACGCAACCAGACCTCGACCAACCCCAAAACCTGCGGCTCAAGCAGAA
CCACCGATGGATAATTTTGATGATGATATTCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

88.333

100

0.924
  ssb Vibrio cholerae strain A1552

51.412

100

0.529
  ssb Neisseria gonorrhoeae MS11

42.938

100

0.442
  ssb Neisseria meningitidis MC58

41.618

100

0.419