Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HRS05_RS02570 Genome accession   NZ_CP054161
Coordinates   528259..528795 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain STO_Bone2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 519773..552208 528259..528795 within 0
IS/Tn 527627..528085 528259..528795 flank 174


Gene organization within MGE regions


Location: 519773..552208
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HRS05_RS02535 (HRS05_02510) yjcE 520580..522229 (-) 1650 WP_235163843.1 Na+/H+ antiporter -
  HRS05_RS02540 (HRS05_02515) ghxP 522380..523729 (-) 1350 WP_000106882.1 guanine/hypoxanthine transporter GhxP -
  HRS05_RS02545 (HRS05_02520) soxR 524275..524739 (-) 465 WP_000412424.1 redox-sensitive transcriptional activator SoxR -
  HRS05_RS02550 (HRS05_02525) soxS 524825..525148 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  HRS05_RS02555 (HRS05_02530) pdeC 525151..526737 (-) 1587 WP_001550430.1 c-di-GMP phosphodiesterase PdeC -
  HRS05_RS02560 (HRS05_02535) yjcB 527167..527448 (+) 282 WP_001295689.1 YjcB family protein -
  HRS05_RS02565 (HRS05_02540) tnpA 527627..528085 (+) 459 WP_000526135.1 IS200/IS605-like element IS200C family transposase -
  HRS05_RS02570 (HRS05_02545) ssb 528259..528795 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  HRS05_RS02575 (HRS05_02550) uvrA 529050..531872 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  HRS05_RS02580 (HRS05_02555) yjbR 531907..532263 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  HRS05_RS02585 (HRS05_02560) yjbQ 532267..532683 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  HRS05_RS02590 (HRS05_02565) aphA 532794..533507 (-) 714 WP_001226928.1 acid phosphatase AphA -
  HRS05_RS02595 - 533908..534130 (+) 223 Protein_514 hypothetical protein -
  HRS05_RS02600 (HRS05_02575) tyrB 534633..535826 (-) 1194 WP_001522223.1 aromatic amino acid transaminase -
  HRS05_RS02605 (HRS05_02580) alr 536079..537158 (-) 1080 WP_001147328.1 alanine racemase -
  HRS05_RS02610 (HRS05_02585) dnaB 537211..538626 (-) 1416 WP_000918363.1 replicative DNA helicase -
  HRS05_RS02615 (HRS05_02590) qorA 538709..539692 (+) 984 WP_021523324.1 quinone oxidoreductase -
  HRS05_RS02620 (HRS05_02595) pspG 539858..540100 (-) 243 WP_000891404.1 envelope stress response protein PspG -
  HRS05_RS02625 (HRS05_02600) dusA 540234..541271 (-) 1038 WP_021523323.1 tRNA dihydrouridine(20/20a) synthase DusA -
  HRS05_RS02630 (HRS05_02605) - 541634..542590 (-) 957 WP_000014226.1 DUF2713 family protein -
  HRS05_RS02635 (HRS05_02610) zur 542908..543423 (+) 516 WP_000416263.1 zinc uptake transcriptional repressor Zur -
  HRS05_RS02640 (HRS05_02615) yjbJ 543465..543674 (-) 210 WP_001030593.1 CsbD family protein -
  HRS05_RS02645 (HRS05_02620) dinF 543790..545115 (-) 1326 WP_021523322.1 MATE family efflux transporter DinF -
  HRS05_RS02650 (HRS05_02625) lexA 545188..545796 (-) 609 WP_000646078.1 transcriptional repressor LexA -
  HRS05_RS02655 (HRS05_02630) dgkA 545906..546274 (-) 369 WP_001522162.1 diacylglycerol kinase -
  HRS05_RS02660 (HRS05_02635) plsB 546445..548868 (+) 2424 WP_000017354.1 glycerol-3-phosphate 1-O-acyltransferase PlsB -
  HRS05_RS02665 (HRS05_02640) ubiA 549023..549895 (-) 873 WP_000455227.1 4-hydroxybenzoate octaprenyltransferase -
  HRS05_RS02670 (HRS05_02645) ubiC 549908..550405 (-) 498 WP_001305723.1 chorismate lyase -
  HRS05_RS02675 (HRS05_02650) - 550628..552208 (-) 1581 WP_020233937.1 SopA family protein -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=451222 HRS05_RS02570 WP_000168305.1 528259..528795(-) (ssb) [Escherichia coli strain STO_Bone2]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=451222 HRS05_RS02570 WP_000168305.1 528259..528795(-) (ssb) [Escherichia coli strain STO_Bone2]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCTGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGACAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTAGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
TGGCACCATGCAGATGTTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGCGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCTGCT
CCGGCAGCACCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489