Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   STMM8_RS08925 Genome accession   NZ_CP065787
Coordinates   1710539..1711807 (-) Length   422 a.a.
NCBI ID   WP_022097049.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain MM8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1705539..1716807
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STMM8_RS08890 (STMM8_08875) - 1705859..1707400 (+) 1542 WP_002948651.1 ABC transporter ATP-binding protein -
  STMM8_RS08895 - 1707533..1707748 (+) 216 WP_041827116.1 hypothetical protein -
  STMM8_RS08900 (STMM8_08880) - 1707778..1708755 (+) 978 WP_011226670.1 replication initiation protein -
  STMM8_RS08905 (STMM8_08885) - 1708767..1708955 (+) 189 WP_000369785.1 DUF3173 domain-containing protein -
  STMM8_RS08910 (STMM8_08890) - 1708957..1710096 (+) 1140 WP_002885655.1 site-specific integrase -
  STMM8_RS08925 (STMM8_08905) rarA 1710539..1711807 (-) 1269 WP_022097049.1 replication-associated recombination protein A Machinery gene
  STMM8_RS08930 (STMM8_08910) rpmB 1711977..1712165 (+) 189 WP_002952184.1 50S ribosomal protein L28 -
  STMM8_RS08935 (STMM8_08915) - 1712292..1712558 (+) 267 WP_002952186.1 IreB family regulatory phosphoprotein -
  STMM8_RS08940 (STMM8_08920) ruvX 1712558..1712977 (+) 420 WP_002952187.1 Holliday junction resolvase RuvX -
  STMM8_RS08945 (STMM8_08925) - 1713086..1713391 (+) 306 WP_002952188.1 DUF1292 domain-containing protein -
  STMM8_RS08950 (STMM8_08930) - 1713604..1715250 (+) 1647 WP_022097050.1 glycosyl transferase -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46477.95 Da        Isoelectric Point: 6.7339

>NTDB_id=451222 STMM8_RS08925 WP_022097049.1 1710539..1711807(-) (rarA) [Streptococcus thermophilus strain MM8]
MPDNLALRMRPRSISEVIGQKHLVGEGKIIRRMVEANMLSSMILYGPPGIGKTSIASAIAGTTKFAFRTFNATVDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKAKQDFLLPLLENGNIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKEAIL
NVLGDKERGFAFEVHLDDDALDFIATATNGDLRSAYNSLDLAVMSTPASGNGQHHITLDIVENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVNASLHYAARLVEAGDLPSLARRLTVIAYEDIGLANPDAQVHTVTALEAAQKIGFPEARILIANVV
IDLALSPKSNSAYKAMDAALADLRKSGNLPIPRHLRDGHYAGSKELGNAQDYKYPHAYPEKWVKQQYLPDKLRGVNYFQP
NETGKYERALGANKERIDKLSR

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=451222 STMM8_RS08925 WP_022097049.1 1710539..1711807(-) (rarA) [Streptococcus thermophilus strain MM8]
ATGCCAGATAATCTTGCTTTACGCATGCGTCCACGTTCAATTTCAGAGGTGATTGGTCAGAAGCATTTAGTTGGTGAAGG
TAAAATTATTCGCCGTATGGTAGAGGCGAATATGCTGTCGTCAATGATTCTCTACGGACCTCCAGGAATCGGGAAAACCT
CGATAGCCAGTGCTATTGCAGGAACAACAAAATTTGCTTTTAGAACTTTTAATGCCACTGTCGATAGCAAAAAACGTCTA
CAGGAAATTGCAGAAGAGGCTAAATTTTCAGGTGGTTTAGTTCTACTTTTAGATGAGATCCATCGTTTGGATAAAGCGAA
ACAAGATTTTTTGTTACCATTATTAGAGAACGGAAATATTATCATGATTGGTGCCACAACCGAGAATCCGTTTTTTTCTG
TGACACCAGCCATCCGTAGCCGTGTACAAATATTTGAGTTGGAACCACTCTCTAATGAAGATATCAAGGAAGCTATTTTG
AATGTTCTAGGGGACAAGGAGCGTGGCTTCGCCTTTGAGGTTCACTTAGATGATGATGCTCTAGATTTTATTGCGACAGC
TACTAATGGTGATTTACGATCGGCATATAATTCTTTGGATCTGGCTGTCATGTCGACACCAGCTTCAGGAAATGGGCAGC
ATCATATTACTTTAGACATAGTTGAAAATAGCTTACAACGCAGTTATATTACTATGGATAAAGACGGTGATGGGCACTAT
GATGTCCTTTCTGCCTTGCAAAAATCTATTCGAGGATCTGATGTTAATGCCAGTCTTCACTATGCGGCACGTTTGGTTGA
GGCAGGGGATTTGCCTAGTCTAGCACGTCGCTTGACTGTGATTGCCTATGAGGATATTGGTTTAGCTAATCCAGATGCAC
AAGTTCACACGGTCACAGCCTTGGAAGCTGCACAGAAAATAGGTTTTCCGGAGGCACGTATTTTGATTGCCAACGTAGTT
ATTGACTTAGCATTATCACCTAAGTCGAATTCGGCTTATAAGGCAATGGATGCTGCCCTGGCGGATCTTAGAAAATCAGG
GAATTTACCGATTCCTCGTCATTTGAGAGATGGACACTATGCTGGAAGCAAGGAACTGGGCAATGCACAAGATTATAAGT
ATCCACATGCCTATCCTGAAAAGTGGGTTAAGCAACAATACCTTCCGGATAAATTAAGAGGTGTGAATTATTTCCAACCC
AATGAAACCGGGAAATATGAAAGAGCTCTTGGAGCTAATAAAGAACGAATCGATAAGTTATCTAGATAA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(173-251)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-415)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.905

99.289

0.595