Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   G9399_RS24005 Genome accession   NZ_CP054160
Coordinates   5251522..5252064 (-) Length   180 a.a.
NCBI ID   WP_024483970.1    Uniprot ID   A0A0F7H909
Organism   Serratia fonticola strain HH13     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5246522..5257064
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G9399_RS23985 (G9399_02385) - 5247557..5248903 (+) 1347 WP_221035301.1 adenylosuccinate lyase family protein -
  G9399_RS23990 (G9399_02375) - 5248972..5249895 (-) 924 WP_221035302.1 LysR family transcriptional regulator -
  G9399_RS23995 (G9399_02370) - 5250258..5250518 (+) 261 WP_065684854.1 YdgH/BhsA/McbA-like domain containing protein -
  G9399_RS24000 (G9399_02365) - 5250715..5251464 (+) 750 WP_161713153.1 3-oxoacyl-ACP reductase family protein -
  G9399_RS24005 (G9399_02360) ssb 5251522..5252064 (-) 543 WP_024483970.1 single-stranded DNA-binding protein SSB1 Machinery gene
  G9399_RS24010 (G9399_02355) uvrA 5252352..5255180 (+) 2829 WP_024528000.1 excinuclease ABC subunit UvrA -
  G9399_RS24015 (G9399_02350) - 5255411..5255830 (-) 420 WP_221035303.1 DUF1090 domain-containing protein -
  G9399_RS24020 (G9399_02345) - 5256208..5256561 (-) 354 WP_021180803.1 MmcQ/YjbR family DNA-binding protein -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 18984.03 Da        Isoelectric Point: 5.2456

>NTDB_id=451215 G9399_RS24005 WP_024483970.1 5251522..5252064(-) (ssb) [Serratia fonticola strain HH13]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWTDQAGVEKYTTEIVVNVGGTMQMLGGRQGGGAPAGGGAPAGGQQGGWGQPQQPQGGNQFSGGQQQQARPAQ
NSAPAASNEPPMDFDDDIPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=451215 G9399_RS24005 WP_024483970.1 5251522..5252064(-) (ssb) [Serratia fonticola strain HH13]
ATGGCCAGCAGAGGCGTAAACAAAGTAATTTTGGTCGGGAATCTGGGTCAAGACCCTGAGGTCCGTTACATGCCTAATGG
CGGCGCAGTTGCCAACATTACCCTGGCGACCTCCGAAAGCTGGCGTGACAAGGCTACTGGCGAGCAGAAAGAAAAAACGG
AATGGCACCGCGTGGTGTTGTTCGGCAAGCTGGCAGAAGTGGCGGGTGAATACCTGCGTAAAGGTTCCCAGGTTTACATC
GAGGGTGCATTGCAGACCCGTAAATGGACCGATCAGGCGGGCGTAGAAAAATACACCACCGAAATCGTGGTCAACGTGGG
TGGCACCATGCAGATGTTGGGTGGCCGCCAAGGTGGTGGTGCTCCAGCAGGCGGCGGCGCTCCAGCAGGTGGCCAGCAGG
GCGGTTGGGGTCAACCTCAGCAGCCACAGGGTGGCAACCAGTTCAGCGGTGGTCAACAGCAGCAGGCTCGCCCAGCGCAA
AACAGCGCACCAGCGGCCAGCAACGAACCGCCAATGGACTTTGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F7H909

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.176

100

0.75
  ssb Glaesserella parasuis strain SC1401

57.368

100

0.606
  ssb Neisseria meningitidis MC58

46.961

100

0.472
  ssb Neisseria gonorrhoeae MS11

46.961

100

0.472