Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   HRE60_RS08740 Genome accession   NZ_CP054153
Coordinates   1936537..1938507 (-) Length   656 a.a.
NCBI ID   WP_149561141.1    Uniprot ID   A0A5C1JKA0
Organism   Streptococcus salivarius strain DB-B5     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1931537..1943507
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HRE60_RS08725 (HRE60_08725) - 1932137..1933027 (-) 891 WP_181670737.1 histidine kinase -
  HRE60_RS08730 (HRE60_08730) - 1933086..1934393 (-) 1308 WP_002885760.1 GHKL domain-containing protein -
  HRE60_RS08735 (HRE60_08735) gltX 1934847..1936301 (-) 1455 WP_181670738.1 glutamate--tRNA ligase -
  HRE60_RS08740 (HRE60_08740) amiA 1936537..1938507 (-) 1971 WP_149561141.1 peptide ABC transporter substrate-binding protein Regulator
  HRE60_RS08745 (HRE60_08745) rplA 1938688..1939377 (-) 690 WP_002885800.1 50S ribosomal protein L1 -
  HRE60_RS08750 (HRE60_08750) rplK 1939477..1939902 (-) 426 WP_002885648.1 50S ribosomal protein L11 -
  HRE60_RS08755 (HRE60_08755) - 1940074..1940427 (+) 354 WP_038676827.1 DUF3397 domain-containing protein -
  HRE60_RS08760 (HRE60_08760) - 1940523..1941020 (-) 498 WP_038676829.1 carbonic anhydrase -
  HRE60_RS08765 (HRE60_08765) - 1941171..1941866 (-) 696 WP_002885783.1 TIGR00266 family protein -
  HRE60_RS08770 (HRE60_08770) radA 1941954..1943315 (-) 1362 WP_181671323.1 DNA repair protein RadA Machinery gene

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 73051.79 Da        Isoelectric Point: 4.8628

>NTDB_id=451189 HRE60_RS08740 WP_149561141.1 1936537..1938507(-) (amiA) [Streptococcus salivarius strain DB-B5]
MKKSKVFLLAAVGLLSVGVLTACSSSSKTSGKTYNYVYGGDPATLDYVSTNKKNMTTAVSNGVDGLFENDQYGNLKPSVA
ENWSVSQDGLTYTYKIRKGVKWYTSDGEEYANVTAKDFVTGLKHAADTNSEAIYLLQNSVKGLNDYLSGANKDFSNVGIK
AVDDYTLQYTLSQPEPYWNSKLTYSVTWPVNEDFLKSKGKDFGKSTDPTSILYNGPYLLKSLTTKSSIEFTKNENYWDKD
NVYFDTVKLTYDDGTDQESLERNFTDGVYNLARLYPTSSNYSKVEKQYKDNIFYTQPGAAVEGVGVNIDRQTYDHTSKEN
DQQKTSTKTALLNKDFRQALGFAIDRTNYAAQLNGKEGGSTAVRNIYVKPDFVQADGKDFGTMVMDQLPAYGDEWSGVNL
ADSQDGLYNPEKAKAEFAKAKEALQAEGVQFPIHLDVPVNQSNKIFVNQVQSLKQSIESALGKDNVVLDLHQLSTDDFYN
ITYSASNAAAEDWDLSVGVAWEPDYLDPSTYLDVLKTTNSENTKSFMGYDDPNSQAVEKVGLKEYDQLVDDASKETTDLT
ARYEKYAKAQAWLTDSALYIPTTTYNGAAAVVSRIKPFSGAYAQAGDKGSTYYFKYLKSQDDIVTKKQYDSAYKDWLKER
AKSNDKAQKDLAKHVK

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=451189 HRE60_RS08740 WP_149561141.1 1936537..1938507(-) (amiA) [Streptococcus salivarius strain DB-B5]
ATGAAAAAGAGTAAGGTATTTTTACTAGCAGCCGTAGGCCTATTATCTGTAGGTGTTTTAACGGCTTGCTCATCATCAAG
TAAGACATCTGGTAAGACTTATAATTATGTTTACGGTGGCGATCCTGCAACCCTAGACTATGTTTCTACAAATAAGAAAA
ACATGACGACAGCCGTTAGTAACGGTGTTGATGGTCTGTTTGAAAATGACCAATATGGGAATCTAAAACCTTCTGTCGCT
GAAAACTGGTCTGTTTCTCAAGATGGTTTGACATATACTTACAAGATTCGTAAGGGTGTCAAATGGTACACTTCAGACGG
TGAAGAATATGCCAATGTAACAGCTAAAGACTTTGTAACAGGTCTTAAGCATGCTGCTGATACTAATTCTGAAGCGATTT
ATTTGCTACAAAACTCAGTTAAGGGCTTGAATGATTACCTTTCAGGTGCCAACAAGGACTTCTCAAATGTTGGTATCAAA
GCAGTTGATGATTACACTTTGCAATATACGCTTAGCCAACCAGAACCTTACTGGAATTCAAAATTGACCTACTCTGTTAC
TTGGCCTGTTAATGAAGATTTCTTGAAATCTAAAGGTAAAGACTTTGGTAAGTCAACAGACCCAACATCTATTCTTTATA
ACGGTCCATATCTTCTTAAATCTTTGACAACGAAATCTTCTATTGAGTTCACCAAGAATGAAAACTACTGGGATAAGGAT
AATGTCTATTTTGATACAGTTAAATTGACTTACGATGATGGTACAGACCAAGAATCCTTGGAACGTAACTTCACTGATGG
AGTCTATAACTTAGCTCGTCTATACCCAACTAGCTCAAACTATTCTAAAGTTGAAAAACAGTACAAAGACAATATTTTCT
ATACACAACCTGGAGCAGCTGTAGAAGGTGTCGGTGTTAATATCGATCGTCAAACTTATGACCATACATCTAAAGAAAAT
GATCAACAAAAGACATCAACTAAGACAGCTCTTCTTAACAAAGATTTCCGTCAAGCATTAGGTTTTGCTATTGACCGTAC
GAATTATGCTGCACAACTTAACGGTAAAGAGGGTGGTAGTACTGCCGTTCGTAATATCTATGTTAAACCAGACTTTGTTC
AAGCAGATGGTAAGGACTTCGGAACAATGGTAATGGATCAACTTCCAGCTTATGGTGATGAGTGGTCTGGTGTGAATCTT
GCAGATAGTCAAGATGGTCTTTATAATCCAGAAAAAGCTAAGGCTGAATTTGCTAAAGCCAAAGAAGCTCTTCAAGCAGA
AGGGGTTCAGTTCCCAATCCATTTGGATGTTCCTGTCAATCAGTCAAATAAAATCTTTGTGAACCAAGTGCAGTCACTTA
AACAATCTATTGAATCAGCTCTTGGAAAAGATAATGTTGTACTTGATCTTCACCAATTGTCAACTGATGATTTCTATAAC
ATTACCTACTCTGCTTCAAATGCAGCGGCAGAGGATTGGGATTTGTCAGTAGGTGTGGCTTGGGAGCCTGATTACCTTGA
TCCATCAACTTATCTTGATGTTTTGAAGACTACAAATAGTGAAAATACTAAATCTTTCATGGGTTATGACGATCCAAATA
GTCAAGCGGTTGAAAAAGTAGGTCTTAAAGAATATGACCAATTGGTTGATGATGCTTCTAAGGAAACAACAGACTTGACG
GCTCGTTATGAAAAATATGCAAAAGCTCAGGCATGGTTGACGGATAGTGCACTTTATATCCCAACGACTACTTATAACGG
TGCAGCCGCTGTAGTTTCTCGTATTAAGCCATTCTCAGGAGCTTATGCTCAAGCTGGTGATAAAGGTTCTACATACTACT
TCAAGTATCTTAAATCTCAAGATGATATTGTGACTAAGAAACAATACGATTCAGCTTATAAAGATTGGCTTAAAGAAAGA
GCGAAATCTAATGACAAAGCTCAAAAAGATCTTGCCAAACACGTTAAGTAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5C1JKA0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

69.97

100

0.7
  amiA3 Streptococcus thermophilus LMD-9

68.189

100

0.683
  amiA3 Streptococcus thermophilus LMG 18311

67.428

100

0.675