Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   HRE60_RS08770 Genome accession   NZ_CP054153
Coordinates   1941954..1943315 (-) Length   453 a.a.
NCBI ID   WP_181671323.1    Uniprot ID   -
Organism   Streptococcus salivarius strain DB-B5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1936954..1948315
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HRE60_RS08745 (HRE60_08745) rplA 1938688..1939377 (-) 690 WP_002885800.1 50S ribosomal protein L1 -
  HRE60_RS08750 (HRE60_08750) rplK 1939477..1939902 (-) 426 WP_002885648.1 50S ribosomal protein L11 -
  HRE60_RS08755 (HRE60_08755) - 1940074..1940427 (+) 354 WP_038676827.1 DUF3397 domain-containing protein -
  HRE60_RS08760 (HRE60_08760) - 1940523..1941020 (-) 498 WP_038676829.1 carbonic anhydrase -
  HRE60_RS08765 (HRE60_08765) - 1941171..1941866 (-) 696 WP_002885783.1 TIGR00266 family protein -
  HRE60_RS08770 (HRE60_08770) radA 1941954..1943315 (-) 1362 WP_181671323.1 DNA repair protein RadA Machinery gene
  HRE60_RS08775 (HRE60_08775) - 1943312..1943779 (-) 468 WP_037611117.1 isochorismatase family cysteine hydrolase -
  HRE60_RS08780 (HRE60_08780) - 1943790..1944236 (-) 447 WP_002885724.1 dUTP diphosphatase -
  HRE60_RS08785 (HRE60_08785) - 1944445..1945047 (+) 603 WP_014635095.1 NADPH-dependent FMN reductase -
  HRE60_RS08790 (HRE60_08790) - 1945066..1946313 (+) 1248 WP_003092053.1 NAD(P)H-dependent oxidoreductase -
  HRE60_RS08795 (HRE60_08795) - 1946430..1947221 (+) 792 WP_002885797.1 formate/nitrite transporter family protein -
  HRE60_RS08800 (HRE60_08800) - 1947230..1947790 (+) 561 WP_181670739.1 MptD family putative ECF transporter S component -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49449.79 Da        Isoelectric Point: 6.3760

>NTDB_id=451190 HRE60_RS08770 WP_181671323.1 1941954..1943315(-) (radA) [Streptococcus salivarius strain DB-B5]
MAKKKSTFVCRECGYNSPKYLGRCPNCSSWSSFEEEVEVQEVKNARVSLTGEKSKPTKLKEVSSINYARIKTDMDEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLANKGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQAVRSQVE
AIKPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELMQIAKTNNIATFIVGHVTKEGQLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSAIVVTMEGSRPILAEVQALVTPTVFGNAK
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKELPTNPQEAFIGEIGLTGEIR
RVTRIEQRINEAAKLGFTKIYAPQNSLHGMKIPEGIQVVGVTTVGEVLKKVFS

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=451190 HRE60_RS08770 WP_181671323.1 1941954..1943315(-) (radA) [Streptococcus salivarius strain DB-B5]
ATAGCTAAGAAAAAATCAACTTTTGTTTGTCGAGAATGTGGCTACAATTCACCCAAATATCTAGGGCGTTGTCCCAACTG
TTCTTCTTGGTCCTCTTTTGAGGAAGAAGTTGAGGTGCAGGAGGTAAAAAATGCTCGTGTCAGTTTAACGGGTGAAAAGT
CTAAACCTACTAAATTAAAAGAAGTCTCCTCAATTAATTATGCCCGCATAAAGACTGACATGGACGAGTTTAACCGTGTT
TTAGGTGGCGGTGTGGTTCCGGGTAGTCTGGTTCTTATTGGAGGAGATCCAGGGATAGGGAAATCGACTCTTCTCTTACA
AGTGTCAACACAGCTGGCTAACAAGGGAACTGTCCTCTATGTTTCTGGGGAAGAATCTGCCGAGCAAATCAAATTGCGGA
GCGAACGTTTAGGTGATATTGATAACGAATTTTATCTTTATGCTGAGACTAATATGCAAGCCGTTCGCAGCCAAGTGGAG
GCTATAAAACCCGATTTCCTCATTATCGACTCTATTCAGACCATCATGAGTCCAGAGATTTCAGGCGTTCAAGGCTCTGT
ATCTCAGGTTCGTGAAGTTACTGCTGAACTCATGCAGATTGCCAAAACCAATAACATTGCTACATTTATTGTTGGGCATG
TGACCAAGGAGGGACAGTTGGCTGGACCACGTATGTTGGAACACATGGTGGATACTGTGCTCTATTTTGAGGGTGAACGT
CATCATACCTTCCGTATTTTACGAGCAGTCAAAAACCGTTTTGGTTCAACTAATGAGATTGGGATTTTTGAGATGCAGTC
TGGTGGTTTGGTAGAAGTGCTAAATCCTAGCCAAGTTTTCTTAGAGGAACGCCTAGACGGAGCCACAGGTTCTGCCATTG
TTGTAACAATGGAAGGTAGCAGACCTATCTTAGCTGAAGTTCAAGCCTTGGTGACCCCAACCGTCTTTGGTAATGCCAAG
CGGACAACAACAGGACTGGATTTTAACCGCGTCAGCCTCATTATGGCAGTTTTAGAGAAACGTTGTGGTCTTCTTCTCCA
AAATCAAGATGCTTATTTAAAATCAGCTGGTGGTGTCAAATTGGACGAGCCGGCTATTGACCTTGCTGTTGCCGTTGCCA
TTGCTTCTAGTTACAAGGAGCTTCCAACCAATCCACAAGAAGCCTTTATAGGAGAAATTGGCTTGACCGGAGAGATACGC
CGAGTAACTCGCATTGAACAGCGTATTAATGAAGCTGCTAAACTAGGTTTTACTAAGATTTATGCTCCCCAAAATTCTCT
GCACGGCATGAAAATTCCAGAAGGTATCCAGGTGGTTGGCGTTACGACAGTGGGAGAAGTACTCAAAAAAGTCTTTTCTT
AA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(63-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

88.521

100

0.885
  radA Streptococcus pneumoniae D39

88.521

100

0.885
  radA Streptococcus pneumoniae R6

88.521

100

0.885
  radA Streptococcus pneumoniae TIGR4

88.521

100

0.885
  radA Streptococcus mitis NCTC 12261

88.521

100

0.885
  radA Streptococcus mitis SK321

88.521

100

0.885
  radA Bacillus subtilis subsp. subtilis str. 168

61.369

100

0.614