Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HRR99_RS06885 Genome accession   NZ_CP054150
Coordinates   1361057..1361581 (+) Length   174 a.a.
NCBI ID   WP_111838355.1    Uniprot ID   -
Organism   Agrobacterium vaccinii strain B7.6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1356057..1366581
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HRR99_RS06875 (HRR99_06855) - 1357004..1357804 (-) 801 WP_233123229.1 DUF72 domain-containing protein -
  HRR99_RS06880 (HRR99_06860) uvrA 1357847..1360768 (-) 2922 WP_233123230.1 excinuclease ABC subunit UvrA -
  HRR99_RS06885 (HRR99_06865) ssb 1361057..1361581 (+) 525 WP_111838355.1 single-stranded DNA-binding protein Machinery gene
  HRR99_RS06890 (HRR99_06870) - 1361608..1361871 (+) 264 WP_233123231.1 hypothetical protein -
  HRR99_RS06895 (HRR99_06875) - 1361960..1363108 (-) 1149 WP_233123232.1 HPP family protein -
  HRR99_RS06900 (HRR99_06880) - 1363129..1363758 (-) 630 WP_112499973.1 MarC family protein -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18485.18 Da        Isoelectric Point: 5.3175

>NTDB_id=451134 HRR99_RS06885 WP_111838355.1 1361057..1361581(+) (ssb) [Agrobacterium vaccinii strain B7.6]
MAGSVNKVILVGNVGADPEIRRTQDGRPIANLRIATSESWRDRNSGERREKTEWHTVVVFNEGLCKVVEQYVKKGAKLYI
EGALQTRKWQDQTGADRYSTEIVLQGFNSTLTMLDGRGEGGGGGAGRGGDDFGGGGGNYGGGNDQPSSSSRGGASRGGQP
AGNFNNDMDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=451134 HRR99_RS06885 WP_111838355.1 1361057..1361581(+) (ssb) [Agrobacterium vaccinii strain B7.6]
ATGGCTGGCAGCGTAAACAAGGTTATTCTGGTTGGAAATGTCGGCGCTGATCCCGAAATTCGCCGCACGCAGGACGGTCG
CCCCATCGCGAATTTGCGGATTGCCACGTCTGAAAGCTGGCGTGACCGTAACTCCGGTGAACGCCGCGAAAAGACCGAAT
GGCACACCGTCGTGGTTTTCAACGAAGGCCTTTGCAAGGTCGTCGAGCAATATGTGAAGAAGGGTGCCAAGCTCTATATC
GAGGGCGCGCTTCAGACCCGCAAATGGCAGGACCAGACCGGCGCCGATCGTTACTCCACGGAAATCGTGTTGCAGGGCTT
CAACTCCACGCTGACCATGCTTGATGGTCGCGGTGAAGGCGGCGGTGGTGGTGCAGGCCGTGGCGGAGACGATTTCGGTG
GCGGCGGCGGAAATTACGGCGGCGGCAACGATCAGCCATCGTCCTCTTCGCGCGGTGGCGCATCCCGCGGCGGCCAGCCA
GCAGGCAATTTCAACAATGACATGGACGACGATATTCCATTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

46.842

100

0.511
  ssb Vibrio cholerae strain A1552

48.864

100

0.494
  ssb Neisseria meningitidis MC58

38.674

100

0.402
  ssb Neisseria gonorrhoeae MS11

38.674

100

0.402