Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HRS00_RS06700 Genome accession   NZ_CP054146
Coordinates   1363230..1363754 (+) Length   174 a.a.
NCBI ID   WP_111838355.1    Uniprot ID   -
Organism   Agrobacterium vaccinii strain B19.1.4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1358230..1368754
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HRS00_RS06690 (HRS00_06670) - 1359176..1359976 (-) 801 WP_233136464.1 DUF72 domain-containing protein -
  HRS00_RS06695 (HRS00_06675) uvrA 1360019..1362940 (-) 2922 WP_233136465.1 excinuclease ABC subunit UvrA -
  HRS00_RS06700 (HRS00_06680) ssb 1363230..1363754 (+) 525 WP_111838355.1 single-stranded DNA-binding protein Machinery gene
  HRS00_RS06705 (HRS00_06685) - 1363781..1364044 (+) 264 WP_233136466.1 hypothetical protein -
  HRS00_RS06710 (HRS00_06690) - 1364133..1365281 (-) 1149 WP_233136467.1 HPP family protein -
  HRS00_RS06715 (HRS00_06695) - 1365302..1365931 (-) 630 WP_112499973.1 MarC family protein -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18485.18 Da        Isoelectric Point: 5.3175

>NTDB_id=451128 HRS00_RS06700 WP_111838355.1 1363230..1363754(+) (ssb) [Agrobacterium vaccinii strain B19.1.4]
MAGSVNKVILVGNVGADPEIRRTQDGRPIANLRIATSESWRDRNSGERREKTEWHTVVVFNEGLCKVVEQYVKKGAKLYI
EGALQTRKWQDQTGADRYSTEIVLQGFNSTLTMLDGRGEGGGGGAGRGGDDFGGGGGNYGGGNDQPSSSSRGGASRGGQP
AGNFNNDMDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=451128 HRS00_RS06700 WP_111838355.1 1363230..1363754(+) (ssb) [Agrobacterium vaccinii strain B19.1.4]
ATGGCTGGCAGCGTAAACAAGGTTATTCTGGTTGGAAACGTCGGCGCTGATCCCGAAATTCGCCGCACGCAGGACGGTCG
CCCCATCGCGAATTTGCGGATTGCCACGTCTGAAAGCTGGCGTGACCGTAACTCCGGCGAACGCCGCGAAAAGACCGAAT
GGCATACCGTCGTAGTTTTCAACGAAGGCCTCTGCAAGGTCGTCGAGCAGTATGTGAAGAAGGGTGCCAAGCTCTACATC
GAGGGCGCGCTTCAGACTCGCAAATGGCAGGACCAGACCGGCGCCGATCGTTACTCCACGGAAATCGTGTTACAGGGCTT
CAACTCTACGCTGACCATGCTTGATGGTCGCGGTGAGGGCGGCGGTGGCGGAGCAGGCCGTGGCGGAGACGATTTCGGTG
GTGGCGGTGGAAATTACGGCGGCGGCAACGATCAGCCATCGTCCTCTTCGCGCGGTGGCGCATCCCGCGGCGGCCAGCCA
GCGGGCAATTTCAACAATGACATGGACGACGATATTCCATTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

46.842

100

0.511
  ssb Vibrio cholerae strain A1552

48.864

100

0.494
  ssb Neisseria meningitidis MC58

38.674

100

0.402
  ssb Neisseria gonorrhoeae MS11

38.674

100

0.402