Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HQN60_RS08665 Genome accession   NZ_CP054143
Coordinates   1828451..1828966 (+) Length   171 a.a.
NCBI ID   WP_173533271.1    Uniprot ID   A0A6M8SYB6
Organism   Deefgea piscis strain D17     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1823451..1833966
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HQN60_RS08650 (HQN60_08650) - 1824488..1825555 (-) 1068 WP_173533269.1 GGDEF domain-containing protein -
  HQN60_RS08655 (HQN60_08655) - 1825706..1826671 (+) 966 WP_254456717.1 phosphotransferase -
  HQN60_RS08660 (HQN60_08660) - 1827001..1828395 (+) 1395 WP_254456602.1 MFS transporter -
  HQN60_RS08665 (HQN60_08665) ssb 1828451..1828966 (+) 516 WP_173533271.1 single-stranded DNA-binding protein Machinery gene
  HQN60_RS08670 (HQN60_08670) - 1829157..1831364 (-) 2208 WP_173533272.1 OsmC domain/YcaO domain-containing protein -
  HQN60_RS08675 (HQN60_08675) - 1831750..1832796 (+) 1047 WP_173533273.1 diguanylate cyclase -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18970.91 Da        Isoelectric Point: 5.3024

>NTDB_id=451118 HQN60_RS08665 WP_173533271.1 1828451..1828966(+) (ssb) [Deefgea piscis strain D17]
MASLNKVLLIGNLGRDPETRFMPNGNAVCNFSIATTESWKDKQSGQKQEKTEWHNISMYGRLAEIAGQYLKKGSSVYIEG
RLQTRKWQDKQTGADRYTTEIIADEMKMLGGRGDTGGNAGGGYNQQGGGDDFNQEYSAPVQQQQQAPRQAPQQAAAKPAR
NFDDFEDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=451118 HQN60_RS08665 WP_173533271.1 1828451..1828966(+) (ssb) [Deefgea piscis strain D17]
ATGGCCTCATTAAATAAAGTATTGCTAATTGGTAATTTGGGTAGAGACCCAGAAACGCGCTTTATGCCCAATGGCAATGC
GGTATGTAATTTTTCGATTGCCACCACTGAGAGCTGGAAAGACAAGCAATCTGGCCAAAAGCAAGAAAAAACCGAATGGC
ATAACATCAGCATGTATGGCCGTTTGGCTGAAATTGCCGGTCAATACTTAAAAAAAGGCAGTAGCGTGTATATCGAAGGT
CGTTTGCAAACCCGCAAATGGCAAGATAAGCAAACCGGTGCTGATCGCTACACTACTGAAATTATCGCTGATGAAATGAA
AATGCTCGGCGGGCGTGGTGATACCGGTGGTAACGCCGGCGGTGGTTACAACCAACAAGGTGGTGGCGATGATTTCAACC
AAGAATACAGCGCCCCAGTGCAACAGCAACAACAAGCGCCACGCCAAGCACCACAGCAAGCTGCAGCAAAACCGGCGCGT
AATTTTGACGACTTTGAAGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6M8SYB6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria meningitidis MC58

54.749

100

0.573
  ssb Neisseria gonorrhoeae MS11

54.749

100

0.573
  ssb Vibrio cholerae strain A1552

54.144

100

0.573
  ssb Glaesserella parasuis strain SC1401

52.486

100

0.556