Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HP555_RS12150 Genome accession   NZ_CP054140
Coordinates   2636948..2637367 (-) Length   139 a.a.
NCBI ID   WP_199262846.1    Uniprot ID   -
Organism   Desulfobulbus oligotrophicus strain Prop6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2631948..2642367
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HP555_RS12125 (HP555_12125) nuoF 2632020..2633291 (-) 1272 WP_199262841.1 NADH-quinone oxidoreductase subunit NuoF -
  HP555_RS12130 (HP555_12130) nuoE 2633305..2633811 (-) 507 WP_199262842.1 NAD(P)H-dependent oxidoreductase subunit E -
  HP555_RS12135 (HP555_12135) - 2633808..2635523 (-) 1716 WP_199262843.1 NADH-quinone oxidoreductase subunit D -
  HP555_RS12140 (HP555_12140) - 2635526..2636038 (-) 513 WP_199262844.1 NADH-quinone oxidoreductase subunit B -
  HP555_RS12145 (HP555_12145) - 2636029..2636388 (-) 360 WP_199262845.1 NADH-quinone oxidoreductase subunit A -
  HP555_RS12150 (HP555_12150) ssb 2636948..2637367 (-) 420 WP_199262846.1 single-stranded DNA-binding protein Machinery gene
  HP555_RS12155 (HP555_12155) - 2637677..2638288 (-) 612 WP_199262847.1 FmdE family protein -
  HP555_RS12160 (HP555_12160) - 2638300..2639052 (-) 753 WP_199262848.1 ABC transporter ATP-binding protein -
  HP555_RS12165 (HP555_12165) - 2639052..2640116 (-) 1065 WP_199262849.1 iron ABC transporter permease -
  HP555_RS12170 (HP555_12170) - 2640116..2641204 (-) 1089 WP_199262850.1 iron ABC transporter substrate-binding protein -
  HP555_RS12175 (HP555_12175) - 2641630..2641968 (-) 339 WP_199262851.1 P-II family nitrogen regulator -

Sequence

Protein


Download         Length: 139 a.a.        Molecular weight: 15574.32 Da        Isoelectric Point: 5.2154

>NTDB_id=451085 HP555_RS12150 WP_199262846.1 2636948..2637367(-) (ssb) [Desulfobulbus oligotrophicus strain Prop6]
MINKVILIGNLGADPELRYTQNGTPMATFSVATTERWKGQDGQMQDQTEWHRIIAWRRLAEICGEYLSKGSRVYIEGKLQ
TRKWQDQNGNDRYTTEIVANEMKMLSPRTSGGGGEYGPPSGFGGDSYQEPHSVGDDVPF

Nucleotide


Download         Length: 420 bp        

>NTDB_id=451085 HP555_RS12150 WP_199262846.1 2636948..2637367(-) (ssb) [Desulfobulbus oligotrophicus strain Prop6]
ATGATTAACAAGGTGATTTTAATAGGCAATCTGGGGGCAGATCCGGAGTTGCGCTATACACAGAATGGTACGCCCATGGC
CACATTCAGCGTGGCTACAACCGAGCGCTGGAAAGGCCAGGATGGACAGATGCAGGATCAGACGGAGTGGCACAGAATTA
TTGCCTGGCGACGGCTGGCGGAAATATGTGGTGAGTACCTTTCAAAAGGTTCACGGGTGTACATAGAGGGTAAACTGCAA
ACGAGGAAGTGGCAGGATCAGAATGGGAACGACCGCTATACCACTGAGATTGTTGCCAACGAAATGAAGATGCTTTCACC
GCGAACAAGTGGAGGCGGGGGAGAGTACGGACCGCCATCAGGGTTTGGTGGTGATTCATATCAGGAGCCCCATTCCGTTG
GTGATGATGTGCCTTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

57.983

85.612

0.496
  ssb Neisseria gonorrhoeae MS11

51.538

93.525

0.482
  ssb Neisseria meningitidis MC58

51.538

93.525

0.482
  ssb Vibrio cholerae strain A1552

54.701

84.173

0.46