Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   HRJ47_RS01540 Genome accession   NZ_CP054137
Coordinates   324173..324700 (+) Length   175 a.a.
NCBI ID   WP_086399364.1    Uniprot ID   -
Organism   Acinetobacter pittii strain JXA13     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 319173..329700
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HRJ47_RS01525 (HRJ47_01525) pilM 321714..322772 (+) 1059 WP_005067078.1 pilus assembly protein PilM Machinery gene
  HRJ47_RS01530 (HRJ47_01530) pilN 322772..323413 (+) 642 WP_086399992.1 PilN domain-containing protein Machinery gene
  HRJ47_RS01535 (HRJ47_01535) pilO 323410..324162 (+) 753 WP_060464993.1 type 4a pilus biogenesis protein PilO Machinery gene
  HRJ47_RS01540 (HRJ47_01540) pilP 324173..324700 (+) 528 WP_086399364.1 pilus assembly protein PilP Machinery gene
  HRJ47_RS01545 (HRJ47_01545) pilQ 324763..326928 (+) 2166 WP_203080013.1 type IV pilus secretin PilQ Machinery gene
  HRJ47_RS01550 (HRJ47_01550) aroK 326940..327509 (+) 570 WP_002116987.1 shikimate kinase AroK -
  HRJ47_RS01555 (HRJ47_01555) aroB 327538..328620 (+) 1083 WP_005067096.1 3-dehydroquinate synthase -
  HRJ47_RS01560 (HRJ47_01560) - 328637..329506 (+) 870 WP_086399363.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19288.36 Da        Isoelectric Point: 9.0286

>NTDB_id=451026 HRJ47_RS01540 WP_086399364.1 324173..324700(+) (pilP) [Acinetobacter pittii strain JXA13]
MKLKQFSLSILACLALAGCDSRIDAVNQQMADIRNQPPQAIEPAPVFTPVPQFNYAAHQLKSPFLPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALESLNMKGSMRNSRGQVMALIQTPDHQIERVQIGNYIGMNQGRITHIGPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=451026 HRJ47_RS01540 WP_086399364.1 324173..324700(+) (pilP) [Acinetobacter pittii strain JXA13]
ATGAAACTTAAACAATTTTCTCTTTCTATTTTGGCATGTTTAGCTTTAGCTGGATGCGACTCTAGAATCGACGCCGTAAA
TCAGCAAATGGCCGATATACGTAATCAGCCACCACAAGCCATAGAACCAGCGCCTGTTTTTACGCCTGTGCCACAATTTA
ATTATGCAGCCCATCAGTTAAAGAGCCCATTTTTACCAAGCTCACTTGCTGCTGAGCTCAAAATTATGGCGGGGAAACGA
GTATATCCGAATTTCTCACGTGCACCACAGCCACTCGAAAGCTATGCATTAGAGTCCTTAAATATGAAAGGAAGTATGCG
TAACAGCCGCGGGCAAGTCATGGCTCTAATCCAAACACCTGATCATCAAATTGAGCGAGTGCAGATAGGGAACTATATCG
GGATGAATCAAGGTCGAATTACCCATATTGGTCCTACTCAGATTGATCTGGTGGAGATTGTCCCTGATGGGCGAGAAGGC
TATGTGGAGAGACCAAGAACCTTAGTGTTAATTGGACCCGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

87.429

100

0.874
  comL Acinetobacter baylyi ADP1

74.545

94.286

0.703