Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   HRJ47_RS01530 Genome accession   NZ_CP054137
Coordinates   322772..323413 (+) Length   213 a.a.
NCBI ID   WP_086399992.1    Uniprot ID   -
Organism   Acinetobacter pittii strain JXA13     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 317772..328413
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HRJ47_RS01510 (HRJ47_01510) - 317778..318110 (+) 333 WP_068563962.1 DUF7709 family protein -
  HRJ47_RS01515 (HRJ47_01515) rrmA 318113..318937 (+) 825 WP_086399991.1 putative RNA methyltransferase -
  HRJ47_RS01520 (HRJ47_01520) ponA 318991..321552 (-) 2562 WP_032052651.1 penicillin-binding protein PBP1a -
  HRJ47_RS01525 (HRJ47_01525) pilM 321714..322772 (+) 1059 WP_005067078.1 pilus assembly protein PilM Machinery gene
  HRJ47_RS01530 (HRJ47_01530) pilN 322772..323413 (+) 642 WP_086399992.1 PilN domain-containing protein Machinery gene
  HRJ47_RS01535 (HRJ47_01535) pilO 323410..324162 (+) 753 WP_060464993.1 type 4a pilus biogenesis protein PilO Machinery gene
  HRJ47_RS01540 (HRJ47_01540) pilP 324173..324700 (+) 528 WP_086399364.1 pilus assembly protein PilP Machinery gene
  HRJ47_RS01545 (HRJ47_01545) pilQ 324763..326928 (+) 2166 WP_203080013.1 type IV pilus secretin PilQ Machinery gene
  HRJ47_RS01550 (HRJ47_01550) aroK 326940..327509 (+) 570 WP_002116987.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24036.55 Da        Isoelectric Point: 5.4186

>NTDB_id=451024 HRJ47_RS01530 WP_086399992.1 322772..323413(+) (pilN) [Acinetobacter pittii strain JXA13]
MATINLLPWRDGLREQRKKQFIILCFGVVVLGITTVFAGWFYLNQKLNDQEQANQLIISTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPAAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMSSFLA
TEEKKDKAISSLLPRVEDSYGSFVVTVDVGEMGVTTTDDTANTSVDMNKEVAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=451024 HRJ47_RS01530 WP_086399992.1 322772..323413(+) (pilN) [Acinetobacter pittii strain JXA13]
ATGGCAACAATTAATTTACTCCCTTGGCGTGATGGGCTTAGGGAGCAGCGTAAAAAACAATTTATTATTTTATGTTTTGG
GGTCGTTGTTTTGGGGATAACCACTGTATTTGCAGGGTGGTTTTATTTGAATCAAAAATTAAATGATCAAGAACAAGCAA
ATCAGCTCATCATCAGTACAAACCAGAATCTAGATCAACAACTTAAAACCTTAAATGGCTTGCAAGAACAGCGGGATGCA
ATTATTGAGCGTATGAAGCTCATTCAAGGTTTGCAAAGCCAGCGTCCGGTCGTTGTACGTTTGGTGGATGAATTAGTACG
TGTGACCCCGGCAGCCATGTATTTGACTAAATTCAGTCGAACCGGAGATAAATTTACGATTGAAGGTAAAGCGGAAAGTC
CAAATACAGTTGCAGAGTTATTACGTAATCTCGAAGCATCGCCATGGTATCGCAACGCTTTTATGAGTTCTTTCTTGGCG
ACCGAAGAGAAAAAAGATAAGGCTATCAGTTCTTTGCTTCCTAGAGTTGAAGATAGCTATGGCAGTTTTGTTGTTACTGT
TGATGTAGGGGAAATGGGGGTGACTACAACAGATGATACCGCCAATACATCTGTAGATATGAATAAAGAGGTGGCAAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

88.263

100

0.883
  comN Acinetobacter baylyi ADP1

71.569

95.775

0.685