Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HQ912_RS04295 Genome accession   NZ_CP054128
Coordinates   982683..983201 (+) Length   172 a.a.
NCBI ID   WP_047229766.1    Uniprot ID   A0A1H8IRE8
Organism   Pseudomonas sp. MPDS     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 977683..988201
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HQ912_RS04285 (HQ912_04285) uvrA 978262..981096 (-) 2835 WP_047229768.1 excinuclease ABC subunit UvrA -
  HQ912_RS04290 (HQ912_04290) - 981276..982673 (+) 1398 WP_076383444.1 MFS transporter -
  HQ912_RS04295 (HQ912_04295) ssb 982683..983201 (+) 519 WP_047229766.1 single-stranded DNA-binding protein Machinery gene
  HQ912_RS04300 (HQ912_04300) - 983310..983864 (-) 555 WP_139049050.1 cysteine hydrolase family protein -
  HQ912_RS04305 (HQ912_04305) - 983961..984953 (+) 993 WP_173406491.1 GlxA family transcriptional regulator -
  HQ912_RS04310 (HQ912_04310) - 985166..986275 (+) 1110 WP_173406492.1 DUF3182 family protein -
  HQ912_RS04315 (HQ912_04315) - 986265..987023 (+) 759 WP_047229762.1 alpha/beta hydrolase family protein -
  HQ912_RS04320 (HQ912_04320) - 987177..988193 (-) 1017 WP_047229761.1 lysylphosphatidylglycerol synthase domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19168.35 Da        Isoelectric Point: 5.9455

>NTDB_id=450914 HQ912_RS04295 WP_047229766.1 982683..983201(+) (ssb) [Pseudomonas sp. MPDS]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDQQQGGNNYQQAAPRQQAPRPQSAPQPQRERPAAPQQAAPQPA
PDFDSFDDDIPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=450914 HQ912_RS04295 WP_047229766.1 982683..983201(+) (ssb) [Pseudomonas sp. MPDS]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACTTGCGGCCAGGATCCCGAAGTTCGCTACCTGCCCAATGGCAA
CGCTGTGACCAACCTGAGTCTGGCGACCAGCGAACAGTGGACCGACAAGCAGACCGGCCAGAAGGTCGAGAAGACCGAAT
GGCACCGCGTGTCGATGTTCGGCAAGGTGGCCGAAATCGCCGGCGAATACCTGCGCAAGGGTTCGCAGGTGTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACCGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTGGGCGGTCGTCCACAGGGTGACCAGCAGCAAGGTGGCAACAACTACCAGCAGGCTGCTCCGCGTCAGC
AAGCACCTCGCCCGCAGTCGGCGCCTCAGCCACAGCGTGAACGTCCAGCGGCTCCGCAACAGGCCGCGCCACAACCGGCT
CCGGACTTCGACAGCTTTGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1H8IRE8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.101

100

0.605
  ssb Neisseria meningitidis MC58

48.889

100

0.512
  ssb Glaesserella parasuis strain SC1401

48.066

100

0.506
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.506