Detailed information
Bioinformatically predicted
Overview
| Name | ruvB | Type | Machinery gene |
| Locus tag | C695_RS05440 | Genome accession | NC_018937 |
| Coordinates | 1120738..1121748 (+) | Length | 336 a.a. |
| NCBI ID | WP_000664449.1 | Uniprot ID | O25699 |
| Organism | Helicobacter pylori Rif1 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 1115738..1126748
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C695_RS05415 (C695_05455) | - | 1115938..1117260 (-) | 1323 | WP_000423121.1 | M23 family metallopeptidase | - |
| C695_RS05420 (C695_05460) | - | 1117270..1118214 (-) | 945 | WP_000911251.1 | outer membrane beta-barrel protein | - |
| C695_RS05425 (C695_05465) | - | 1118223..1119065 (-) | 843 | WP_001862786.1 | outer membrane beta-barrel protein | - |
| C695_RS05430 (C695_05470) | - | 1119055..1119777 (-) | 723 | WP_001862785.1 | hypothetical protein | - |
| C695_RS05435 (C695_05475) | panB | 1119926..1120738 (+) | 813 | WP_000062669.1 | 3-methyl-2-oxobutanoate hydroxymethyltransferase | - |
| C695_RS05440 (C695_05480) | ruvB | 1120738..1121748 (+) | 1011 | WP_000664449.1 | Holliday junction branch migration DNA helicase RuvB | Machinery gene |
| C695_RS05445 (C695_05485) | tatB | 1121816..1122298 (+) | 483 | WP_000467616.1 | Sec-independent protein translocase protein TatB | - |
| C695_RS05450 (C695_05490) | tatC | 1122291..1123052 (+) | 762 | WP_000461250.1 | twin-arginine translocase subunit TatC | - |
| C695_RS05455 (C695_05495) | queA | 1123053..1124090 (+) | 1038 | WP_000657423.1 | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | - |
| C695_RS05460 (C695_05500) | rsmG | 1124087..1124623 (+) | 537 | WP_001068828.1 | 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG | - |
| C695_RS05465 (C695_05505) | - | 1124617..1124847 (+) | 231 | WP_000944436.1 | PP0621 family protein | - |
| C695_RS05470 (C695_05510) | - | 1124850..1125257 (+) | 408 | WP_000906037.1 | hypothetical protein | - |
| C695_RS05480 (C695_05515) | - | 1125390..1125962 (-) | 573 | WP_001879972.1 | outer membrane protein | - |
| C695_RS05485 (C695_05520) | - | 1126283..1126657 (+) | 375 | WP_000772151.1 | chemotaxis response regulator CheY | - |
Sequence
Protein
Download Length: 336 a.a. Molecular weight: 37360.42 Da Isoelectric Point: 6.0715
>NTDB_id=45085 C695_RS05440 WP_000664449.1 1120738..1121748(+) (ruvB) [Helicobacter pylori Rif1]
MKERIVNLETLDFEISQEVSLRPSLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN
IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATT
RAGMLSNPLRDRFGMSFRMQFYNPSELALIIKKAAVKLNQDIKQESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLM
DLNITLHALNELGVNELGFDEADLAYLSLLANAQGKPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATPK
THELLKIPTLNPQTLF
MKERIVNLETLDFEISQEVSLRPSLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN
IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATT
RAGMLSNPLRDRFGMSFRMQFYNPSELALIIKKAAVKLNQDIKQESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLM
DLNITLHALNELGVNELGFDEADLAYLSLLANAQGKPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATPK
THELLKIPTLNPQTLF
Nucleotide
Download Length: 1011 bp
>NTDB_id=45085 C695_RS05440 WP_000664449.1 1120738..1121748(+) (ruvB) [Helicobacter pylori Rif1]
ATGAAAGAACGGATAGTCAATTTAGAAACTTTGGATTTTGAAATTTCTCAAGAAGTGAGTTTGCGCCCTAGTCTTTGGGA
AGATTTTATCGGTCAAGAAAAGATTAAAAGCAATTTGCAAATTTCTATTTGCGCGGCTAAAAAACGCCAAGAAAGTTTGG
ATCACATGCTTTTTTTTGGCCCGCCCGGTTTGGGTAAAACTTCAATCAGCCATATCATCGCTAAAGAAATGGAAACCAAT
ATCAAGATCACCGCCGCTCCCATGATAGAAAAAAGCGGTGATTTAGCCGCCATTTTGACCAATTTGCAAGCTAAAGACAT
TCTTTTTATTGATGAAATCCACCGGCTCAGCCCAGCGATTGAAGAGGTTTTATACCCGGCGATGGAAGATTTTAGGTTGG
ATATTATCATAGGCTCAGGCCCAGCGGCTCAAACCATTAAAATTGATTTACCCCCTTTCACTCTCATCGGCGCTACCACC
AGAGCCGGAATGCTCTCTAACCCCTTAAGAGACAGATTTGGCATGAGTTTTAGAATGCAATTTTATAACCCTAGCGAACT
GGCCCTCATCATTAAAAAAGCTGCCGTTAAACTCAACCAAGACATCAAACAAGAAAGTGCTGATGAAATCGCTAAAAGGA
GTAGAGGCACGCCAAGGATCGCTTTAAGGCTTTTAAAAAGGGTGCGCGATTTTGCGCTAGTCAAAAATTCAAGCTTGATG
GATTTAAACATCACTTTGCATGCTTTGAATGAATTAGGCGTGAATGAATTAGGCTTTGATGAAGCGGATTTGGCGTATTT
ATCTTTGTTGGCTAACGCTCAAGGAAAGCCGGTGGGTTTGAACACGATTGCAGCATCTATGAGAGAAGATGAAGGCACGA
TTGAAGACGTGATTGAGCCTTTTTTACTCGCTAATGGTTATTTAGAGCGCACCGCTAAAGGCAGAATCGCCACGCCTAAA
ACCCATGAGCTCTTAAAAATCCCCACTTTAAACCCCCAAACTTTATTTTAA
ATGAAAGAACGGATAGTCAATTTAGAAACTTTGGATTTTGAAATTTCTCAAGAAGTGAGTTTGCGCCCTAGTCTTTGGGA
AGATTTTATCGGTCAAGAAAAGATTAAAAGCAATTTGCAAATTTCTATTTGCGCGGCTAAAAAACGCCAAGAAAGTTTGG
ATCACATGCTTTTTTTTGGCCCGCCCGGTTTGGGTAAAACTTCAATCAGCCATATCATCGCTAAAGAAATGGAAACCAAT
ATCAAGATCACCGCCGCTCCCATGATAGAAAAAAGCGGTGATTTAGCCGCCATTTTGACCAATTTGCAAGCTAAAGACAT
TCTTTTTATTGATGAAATCCACCGGCTCAGCCCAGCGATTGAAGAGGTTTTATACCCGGCGATGGAAGATTTTAGGTTGG
ATATTATCATAGGCTCAGGCCCAGCGGCTCAAACCATTAAAATTGATTTACCCCCTTTCACTCTCATCGGCGCTACCACC
AGAGCCGGAATGCTCTCTAACCCCTTAAGAGACAGATTTGGCATGAGTTTTAGAATGCAATTTTATAACCCTAGCGAACT
GGCCCTCATCATTAAAAAAGCTGCCGTTAAACTCAACCAAGACATCAAACAAGAAAGTGCTGATGAAATCGCTAAAAGGA
GTAGAGGCACGCCAAGGATCGCTTTAAGGCTTTTAAAAAGGGTGCGCGATTTTGCGCTAGTCAAAAATTCAAGCTTGATG
GATTTAAACATCACTTTGCATGCTTTGAATGAATTAGGCGTGAATGAATTAGGCTTTGATGAAGCGGATTTGGCGTATTT
ATCTTTGTTGGCTAACGCTCAAGGAAAGCCGGTGGGTTTGAACACGATTGCAGCATCTATGAGAGAAGATGAAGGCACGA
TTGAAGACGTGATTGAGCCTTTTTTACTCGCTAATGGTTATTTAGAGCGCACCGCTAAAGGCAGAATCGCCACGCCTAAA
ACCCATGAGCTCTTAAAAATCCCCACTTTAAACCCCCAAACTTTATTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvB | Helicobacter pylori 26695 |
100 |
100 |
1 |
| ruvB | Bacillus subtilis subsp. subtilis str. 168 |
52.744 |
97.619 |
0.515 |
| ruvB | Streptococcus pneumoniae TIGR4 |
50.774 |
96.131 |
0.488 |
| ruvB | Streptococcus pneumoniae R6 |
50.774 |
96.131 |
0.488 |
| ruvB | Streptococcus pneumoniae D39 |
50.774 |
96.131 |
0.488 |
| ruvB | Synechocystis sp. PCC 6803 |
51.104 |
94.345 |
0.482 |