Detailed information    

insolico Bioinformatically predicted

Overview

Name   comW   Type   Regulator
Locus tag   I6G43_RS09280 Genome accession   NZ_CP065706
Coordinates   200930..201163 (+) Length   77 a.a.
NCBI ID   WP_000939517.1    Uniprot ID   -
Organism   Streptococcus oralis strain FDAARGOS_886     
Function   stabilization and activation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 195930..206163
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G43_RS00935 (I6G43_00935) tnpA 200362..200665 (+) 304 Protein_179 IS200/IS605 family transposase -
  I6G43_RS09280 comW 200930..201163 (+) 234 WP_000939517.1 sigma(X)-activator ComW Regulator
  I6G43_RS00940 (I6G43_00940) - 201401..202687 (+) 1287 WP_025168358.1 adenylosuccinate synthase -
  I6G43_RS00945 (I6G43_00945) - 203171..203716 (-) 546 WP_000976886.1 hypothetical protein -
  I6G43_RS00950 (I6G43_00950) tadA 203982..204449 (+) 468 WP_000386762.1 tRNA adenosine(34) deaminase TadA -
  I6G43_RS00960 (I6G43_00960) - 204635..205078 (+) 444 WP_000701981.1 dUTP diphosphatase -
  I6G43_RS00965 (I6G43_00965) - 205080..205595 (+) 516 WP_000691232.1 histidine phosphatase family protein -

Sequence

Protein


Download         Length: 77 a.a.        Molecular weight: 9520.09 Da        Isoelectric Point: 7.8398

>NTDB_id=450770 I6G43_RS09280 WP_000939517.1 200930..201163(+) (comW) [Streptococcus oralis strain FDAARGOS_886]
MLQKFYERAFVFLKLVEQEYASLCQSSAEWESLHLRFLLYYLIRFRIKSDKEFCLYHFQTAYRLYLDKFLLEGTTLN

Nucleotide


Download         Length: 234 bp        

>NTDB_id=450770 I6G43_RS09280 WP_000939517.1 200930..201163(+) (comW) [Streptococcus oralis strain FDAARGOS_886]
ATGCTTCAAAAATTTTATGAACGAGCATTTGTCTTTTTGAAACTAGTTGAACAAGAATATGCTTCTTTATGCCAGAGTTC
TGCTGAGTGGGAATCACTTCATCTTCGTTTTTTACTTTATTATTTGATAAGATTTAGAATTAAAAGCGATAAAGAGTTTT
GTTTATATCATTTTCAGACGGCCTATCGCTTGTATCTAGATAAATTCTTGCTAGAAGGTACTACTCTAAACTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comW Streptococcus pneumoniae Rx1

43.056

93.506

0.403
  comW Streptococcus pneumoniae D39

43.056

93.506

0.403
  comW Streptococcus pneumoniae R6

43.056

93.506

0.403
  comW Streptococcus pneumoniae TIGR4

43.056

93.506

0.403
  comW Streptococcus mitis NCTC 12261

41.667

93.506

0.39
  comW Streptococcus mitis SK321

41.667

93.506

0.39