Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   F8539_RS16025 Genome accession   NZ_CP054060
Coordinates   3402334..3402882 (-) Length   182 a.a.
NCBI ID   WP_015872740.1    Uniprot ID   -
Organism   Edwardsiella ictaluri strain T1-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3397334..3407882
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F8539_RS16010 (F8539_16005) ygeW 3398327..3399514 (-) 1188 WP_015872737.1 knotted carbamoyltransferase YgeW -
  F8539_RS16015 (F8539_16010) - 3400061..3401845 (+) 1785 WP_015872738.1 sigma-54 interaction domain-containing protein -
  F8539_RS16020 (F8539_16015) - 3401875..3402204 (-) 330 WP_015872739.1 hypothetical protein -
  F8539_RS16025 (F8539_16020) ssb 3402334..3402882 (-) 549 WP_015872740.1 single-stranded DNA-binding protein Machinery gene
  F8539_RS16030 (F8539_16025) uvrA 3403110..3405941 (+) 2832 WP_015872741.1 excinuclease ABC subunit UvrA -
  F8539_RS16035 (F8539_16030) - 3406027..3406371 (-) 345 WP_035608998.1 MmcQ/YjbR family DNA-binding protein -
  F8539_RS16040 (F8539_16035) - 3406364..3406790 (-) 427 Protein_3129 secondary thiamine-phosphate synthase enzyme YjbQ -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 19681.71 Da        Isoelectric Point: 5.2440

>NTDB_id=450505 F8539_RS16025 WP_015872740.1 3402334..3402882(-) (ssb) [Edwardsiella ictaluri strain T1-1]
MASRGVNKVILIGNLGQDPEVRYMPNGGAVANLTLATSDSWRDKQTGEQKERTEWHRVALYGKLAEIAGEYLRKGSQVYI
EGQLRTRKWQDQSGQDRYTTEVVVDISGSMQMLGGRQGGAPMGNQGQQGGWGQPQQPQGAAFSGGQAAPRQQSQQGGYSA
PAQPAAPQSSEPPMDFDDDIPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=450505 F8539_RS16025 WP_015872740.1 3402334..3402882(-) (ssb) [Edwardsiella ictaluri strain T1-1]
ATGGCCAGCAGAGGCGTAAATAAAGTGATTCTTATCGGGAATCTGGGTCAGGACCCGGAGGTCCGCTATATGCCGAACGG
CGGCGCCGTTGCCAATTTGACGCTGGCAACCTCTGACAGCTGGCGTGACAAGCAGACCGGTGAGCAGAAAGAGCGCACCG
AATGGCACCGTGTTGCGCTGTACGGCAAGCTGGCGGAAATCGCCGGTGAGTACCTGCGTAAAGGCTCCCAAGTGTACATC
GAAGGCCAGCTGCGTACCCGTAAGTGGCAGGATCAGAGCGGCCAGGATCGCTATACCACGGAAGTGGTGGTCGATATCAG
CGGTTCCATGCAGATGCTGGGCGGCCGCCAAGGCGGCGCGCCGATGGGCAACCAGGGGCAGCAGGGTGGCTGGGGTCAGC
CGCAGCAGCCGCAGGGCGCCGCATTCAGCGGCGGCCAGGCGGCACCGCGTCAGCAGTCACAGCAGGGCGGCTATTCCGCG
CCGGCTCAGCCGGCAGCGCCGCAGAGCAGCGAACCGCCGATGGACTTTGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

73.016

100

0.758
  ssb Glaesserella parasuis strain SC1401

54.404

100

0.577
  ssb Neisseria meningitidis MC58

47.09

100

0.489
  ssb Neisseria gonorrhoeae MS11

47.09

100

0.489