Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   A8O29_RS21015 Genome accession   NZ_CP054058
Coordinates   4234712..4235248 (-) Length   178 a.a.
NCBI ID   WP_125354134.1    Uniprot ID   -
Organism   Scandinavium goeteborgense strain CCUG 66741     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4229712..4240248
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A8O29_RS20995 (A8O29_020990) soxS 4230165..4230494 (+) 330 WP_110511020.1 superoxide response transcriptional regulator SoxS -
  A8O29_RS21000 (A8O29_020995) - 4230479..4232077 (-) 1599 WP_125354137.1 EAL domain-containing protein -
  A8O29_RS21005 (A8O29_021000) - 4232380..4233777 (-) 1398 WP_125354135.1 GGDEF domain-containing protein -
  A8O29_RS21010 (A8O29_021005) - 4234322..4234609 (+) 288 WP_110511023.1 YjcB family protein -
  A8O29_RS21015 (A8O29_021010) ssb 4234712..4235248 (-) 537 WP_125354134.1 single-stranded DNA-binding protein SSB1 Machinery gene
  A8O29_RS21020 (A8O29_021015) uvrA 4235496..4238318 (+) 2823 WP_125354132.1 excinuclease ABC subunit UvrA -
  A8O29_RS21025 (A8O29_021020) - 4238319..4238672 (-) 354 WP_125354131.1 MmcQ/YjbR family DNA-binding protein -
  A8O29_RS21030 (A8O29_021025) aphA 4238789..4239505 (-) 717 WP_125354129.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18889.93 Da        Isoelectric Point: 5.2456

>NTDB_id=450480 A8O29_RS21015 WP_125354134.1 4234712..4235248(-) (ssb) [Scandinavium goeteborgense strain CCUG 66741]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGAEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGSWGQPQQPQGGGNQFSGGAQSRPQQQPAA
APAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=450480 A8O29_RS21015 WP_125354134.1 4234712..4235248(-) (ssb) [Scandinavium goeteborgense strain CCUG 66741]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGTGCAGTTGCCAACATTACGCTGGCTACTTCTGAATCCTGGCGTGATAAAGCGACCGGCGAAATGAAAGAGCAGACTG
AATGGCACCGTGTCGTGCTGTTCGGCAAACTGGCAGAAGTGGCCGGTGAATATCTGCGTAAAGGTTCCCAGGTCTACATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAGAGCGGTGCTGAAAAATACACCACTGAAGTGGTTGTTAACGTAGG
CGGCACCATGCAGATGCTCGGCGGCCGTCAAGGCGGCGGTGCACCAGCAGGTGGCGGTCAGCAGCAGGGTGGAAGCTGGG
GTCAACCACAGCAGCCACAGGGCGGCGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGTCCGCAGCAGCAGCCAGCCGCT
GCACCGGCTCCGTCTAACGAACCGCCGATGGATTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.054

100

0.77
  ssb Glaesserella parasuis strain SC1401

56.989

100

0.596
  ssb Neisseria meningitidis MC58

47.778

100

0.483
  ssb Neisseria gonorrhoeae MS11

47.753

100

0.478