Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HRD70_RS02435 Genome accession   NZ_CP054049
Coordinates   570286..570834 (-) Length   182 a.a.
NCBI ID   WP_004711194.1    Uniprot ID   A0A380PUK3
Organism   Yersinia kristensenii strain 2012N-4030     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 565286..575834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HRD70_RS02420 (HRD70_02420) - 565750..567399 (-) 1650 WP_032820460.1 Na+/H+ antiporter -
  HRD70_RS02425 (HRD70_02425) - 567613..568980 (-) 1368 WP_032820461.1 NCS2 family permease -
  HRD70_RS02430 (HRD70_02430) - 569446..570114 (-) 669 WP_049561370.1 glutathione S-transferase family protein -
  HRD70_RS02435 (HRD70_02435) ssb 570286..570834 (-) 549 WP_004711194.1 single-stranded DNA-binding protein SSB1 Machinery gene
  HRD70_RS02440 (HRD70_02440) uvrA 571236..574067 (+) 2832 WP_050096245.1 excinuclease ABC subunit UvrA -
  HRD70_RS02445 (HRD70_02445) - 574113..574466 (-) 354 WP_004391843.1 MmcQ/YjbR family DNA-binding protein -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 19098.13 Da        Isoelectric Point: 4.9663

>NTDB_id=450309 HRD70_RS02435 WP_004711194.1 570286..570834(-) (ssb) [Yersinia kristensenii strain 2012N-4030]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWTDQAGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGAPQEGGAQGGWGQPQQPQGGNQFSGGQTSRPAQS
APAAQPQGGNEPPMDFDDDIPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=450309 HRD70_RS02435 WP_004711194.1 570286..570834(-) (ssb) [Yersinia kristensenii strain 2012N-4030]
ATGGCCAGCAGAGGCGTAAACAAAGTGATTTTGGTCGGGAATTTGGGCCAAGACCCGGAAGTCCGCTACATGCCGAACGG
CGGCGCTGTTGCCAATATCACCCTGGCAACTTCCGAAAGCTGGCGTGATAAAGCCACTGGCGAGCAGAAAGAAAAGACGG
AATGGCACCGGGTGGTGTTGTTCGGCAAGCTAGCTGAAGTTGCTGGTGAATATCTGCGCAAAGGCTCTCAGGTCTATATT
GAAGGCGCTCTACAGACCCGTAAGTGGACAGATCAGGCGGGTGTTGAGAAATACACCACAGAAGTTGTGGTTAACGTGGG
TGGCACCATGCAAATGCTGGGTGGCCGTCAAGGCGGCGGTGCTCCAGCGGGTGGCGGTGCACCACAAGAGGGCGGCGCAC
AAGGCGGATGGGGTCAACCTCAGCAGCCACAAGGTGGCAACCAGTTTAGCGGCGGTCAGACTTCACGCCCGGCTCAGTCT
GCACCAGCAGCACAACCCCAAGGCGGCAATGAGCCACCAATGGATTTTGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A380PUK3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

73.913

100

0.747
  ssb Glaesserella parasuis strain SC1401

55.729

100

0.588
  ssb Neisseria meningitidis MC58

46.448

100

0.467
  ssb Neisseria gonorrhoeae MS11

46.703

100

0.467