Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HRD68_RS11480 Genome accession   NZ_CP054048
Coordinates   2353130..2353675 (+) Length   181 a.a.
NCBI ID   WP_019212327.1    Uniprot ID   A0AAI8ZTD4
Organism   Yersinia massiliensis strain 2011N-4075     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2348130..2358675
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HRD68_RS11470 (HRD68_11475) - 2349394..2349747 (+) 354 WP_019212325.1 MmcQ/YjbR family DNA-binding protein -
  HRD68_RS11475 (HRD68_11480) uvrA 2349906..2352737 (-) 2832 WP_050082920.1 excinuclease ABC subunit UvrA -
  HRD68_RS11480 (HRD68_11485) ssb 2353130..2353675 (+) 546 WP_019212327.1 single-stranded DNA-binding protein SSB1 Machinery gene
  HRD68_RS11485 (HRD68_11490) - 2353953..2354567 (+) 615 WP_050082963.1 hypothetical protein -
  HRD68_RS11490 (HRD68_11495) - 2354567..2355052 (+) 486 WP_050082918.1 surface-adhesin E family protein -
  HRD68_RS11495 (HRD68_11500) - 2355183..2355851 (+) 669 WP_050082917.1 glutathione S-transferase family protein -
  HRD68_RS11500 (HRD68_11505) - 2356213..2357580 (+) 1368 WP_050082916.1 NCS2 family permease -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 19174.10 Da        Isoelectric Point: 4.9567

>NTDB_id=450302 HRD68_RS11480 WP_019212327.1 2353130..2353675(+) (ssb) [Yersinia massiliensis strain 2011N-4075]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWQDQSGQERYTTEVVVNVGGTMQMLGGRQGGGAPAGGSQQDGGAQGGWGQPQQPQGGNQFSGGQTSRPAQSA
PAAQPQGGNEPPMDFDDDIPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=450302 HRD68_RS11480 WP_019212327.1 2353130..2353675(+) (ssb) [Yersinia massiliensis strain 2011N-4075]
ATGGCCAGCAGAGGCGTAAACAAAGTGATTTTGGTCGGGAATTTGGGCCAAGACCCGGAAGTCCGCTACATGCCTAACGG
CGGGGCTGTTGCCAATATCACCCTGGCCACTTCCGAAAGCTGGCGTGATAAAGCAACCGGCGAGCAAAAAGAGAAAACGG
AATGGCACCGTGTCGTGCTGTTCGGCAAGCTGGCTGAAGTCGCGGGTGAATATCTGCGTAAAGGCTCTCAGGTCTATATC
GAAGGCGCATTGCAAACCCGCAAATGGCAGGACCAAAGTGGTCAAGAGCGCTACACCACTGAAGTTGTGGTTAACGTTGG
CGGTACTATGCAAATGTTGGGTGGTCGTCAAGGCGGTGGCGCACCAGCAGGTGGTTCACAGCAAGATGGCGGCGCGCAAG
GCGGTTGGGGTCAGCCTCAGCAACCACAAGGTGGTAATCAGTTCAGCGGCGGTCAAACTTCACGCCCTGCTCAGTCTGCC
CCAGCAGCTCAGCCACAAGGCGGCAATGAGCCTCCAATGGATTTTGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

75.956

100

0.768
  ssb Glaesserella parasuis strain SC1401

54.737

100

0.575
  ssb Neisseria meningitidis MC58

47.027

100

0.481
  ssb Neisseria gonorrhoeae MS11

47.778

99.448

0.475